Analysis of interatomic Contacts of Structural Units in PDB entry:
43YY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 43YY entry

There are 3 chains in PDB entry 43YY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 28LEU 480
H
 GLU 20ALA 144
L
 GLN 20GLY 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 43YY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 38Right-handed alpha
Helix 2
AA2
A
221 223Right-handed 310
Helix 3
AA3
A
233 241Right-handed alpha
Helix 4
AA4
A
325 331Right-handed alpha
Helix 5
AA5
A
466 475Right-handed alpha
Helix 6
AA6
H
106 110Right-handed 310
Helix 7
AA7
L
48 52Right-handed 310
Helix 8
AA8
L
99 103Right-handed 310
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There are 13 sheets in PDB entry 43YY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
213 217anti-parallel
Strand 3
A
225 229anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
189 196anti-parallel
Strand 3
A
91 97anti-parallel
Strand 4
A
106 109anti-parallel
Strand 5
A
120 127anti-parallel
Strand 6
A
146 155anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
173 176anti-parallel
Strand 3
A
164 168anti-parallel
Strand 4
A
79 84anti-parallel
Strand 5
A
202 207anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 286first strand
Strand 2
A
438 454anti-parallel
Strand 3
A
318 323anti-parallel
Strand 4
A
397 401anti-parallel
Strand 5
A
405 408anti-parallel
Strand 6
A
411 415anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 286first strand
Strand 2
A
438 454anti-parallel
Strand 3
A
457 463anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 298first strand
Strand 2
A
419 425anti-parallel
Strand 3
A
334 339anti-parallel
Strand 4
A
344 350anti-parallel
Strand 5
A
371 379anti-parallel
Strand 6
A
382 391anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 26first strand
Strand 2
H
37 44anti-parallel
Strand 3
H
97 102anti-parallel
Strand 4
H
87 92anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 31first strand
Strand 2
H
137 141parallel
Strand 3
H
111 118anti-parallel
Strand 4
H
52 58anti-parallel
Strand 5
H
64 70anti-parallel
Strand 6
H
77 79anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 31first strand
Strand 2
H
137 141parallel
Strand 3
H
111 118anti-parallel
Strand 4
H
132 133anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
22 23first strand
Strand 2
L
41 42anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
27 30first strand
Strand 2
L
123 127parallel
Strand 3
L
104 113anti-parallel
Strand 4
L
54 58anti-parallel
Strand 5
L
65 68anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
27 30first strand
Strand 2
L
123 127parallel
Strand 3
L
104 113anti-parallel
Strand 4
L
116 119anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
36 38first strand
Strand 2
L
90 95anti-parallel
Strand 3
L
82 87anti-parallel
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