Analysis of interatomic Contacts of Structural Units in PDB entry:
487D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 487D entry

There are 7 chains in PDB entry 487D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 LYS 5SER 228
I
 GLN 60VAL 194
J
 PRO 7LEU 170
K
 MET 1LYS 149
L
 GLN 8VAL 140
M
 MET 1ILE 122
N
 MET 1ALA 94
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 487D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
21 31Right-handed alpha
Helix 2
2
H
53 57Right-handed 310
Helix 3
3
H
80 89Right-handed alpha
Helix 4
4
H
96 98Right-handed 310
Helix 5
5
H
99 105Right-handed alpha
Helix 6
6
H
119 128Right-handed alpha
Helix 7
7
H
127 135Right-handed alpha
Helix 8
8
H
148 158Right-handed alpha
Helix 9
9
H
181 198Right-handed alpha
Helix 10
10
I
132 134Right-handed 310
Helix 11
11
J
57 80Right-handed alpha
Helix 12
12
J
136 149Right-handed alpha
Helix 13
13
K
13 16Right-handed 310
Helix 14
14
K
24 29Right-handed alpha
Helix 15
15
K
40 73Right-handed alpha
Helix 16
16
K
84 86Right-handed 310
Helix 17
17
K
94 107Right-handed alpha
Helix 18
18
K
111 114Right-handed 310
Helix 19
19
L
24 30Right-handed alpha
Helix 20
20
L
35 49Right-handed alpha
Helix 21
21
L
74 84Right-handed alpha
Helix 22
22
L
101 113Right-handed alpha
Helix 23
23
L
114 116Right-handed 310
Helix 24
24
L
120 133Right-handed alpha
Helix 25
25
M
104 109Right-handed alpha
Helix 26
26
M
111 118Right-handed alpha
Helix 27
27
N
14 23Right-handed alpha
Helix 28
28
N
44 53Right-handed alpha
Helix 29
29
N
54 59Right-handed alpha
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There are 18 sheets in PDB entry 487D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
170 177first strand
Strand 2
H
40 47anti-parallel
Strand 3
H
209 215anti-parallel
Strand 4
H
222 224anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
59 63first strand
Strand 2
H
160 164anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
93 95first strand
Strand 2
H
74 77parallel
Strand 3
H
112 115parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
100 104first strand
Strand 2
I
88 95anti-parallel
Strand 3
I
75 83anti-parallel
Strand 4
I
114 115anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
128 130first strand
Strand 2
I
188 191anti-parallel
Strand 3
I
139 141anti-parallel
Strand 4
I
161 167anti-parallel
Strand 5
I
170 174anti-parallel
Strand 6
I
180 184anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
143 144first strand
Strand 2
I
151 153anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
8 9first strand
Strand 2
J
48 52anti-parallel
Strand 3
J
41 45anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
15 19first strand
Strand 2
J
22 27anti-parallel
Strand 3
J
30 35anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
120 126first strand
Strand 2
J
129 134anti-parallel
Strand 3
J
83 89anti-parallel
Strand 4
J
160 163anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
94 98first strand
Strand 2
J
101 105anti-parallel
Strand 3
J
112 114anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
17 20first strand
Strand 2
K
2 5anti-parallel
Strand 3
K
36 38anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
77 81first strand
Strand 2
K
137 147parallel
Strand 3
K
125 134anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
88 93first strand
Strand 2
K
121 123anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
54 59anti-parallel
Strand 3
L
67 70anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
98 100first strand
Strand 2
L
137 139parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
7 10first strand
Strand 2
M
16 24anti-parallel
Strand 3
M
38 46anti-parallel
Strand 4
M
57 64anti-parallel
Strand 5
M
83 86anti-parallel
Strand 6
M
7 10parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
69 70first strand
Strand 2
M
76 77anti-parallel
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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
4 8first strand
Strand 2
N
38 43anti-parallel
Strand 3
N
25 31anti-parallel
Strand 4
N
86 93parallel
Strand 5
N
68 79anti-parallel
Strand 6
N
61 65anti-parallel
Strand 7
N
4 8parallel
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