Analysis of interatomic Contacts of Structural Units in PDB entry:
4A05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4A05 entry

There is 1 chain in PDB entry 4A05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 116PRO 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4A05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 140Right-handed alpha
Helix 2
2
A
141 144Right-handed 310
Helix 3
3
A
145 156Right-handed alpha
Helix 4
4
A
166 170Right-handed 310
Helix 5
5
A
172 187Right-handed alpha
Helix 6
6
A
217 220Right-handed 310
Helix 7
7
A
221 240Right-handed alpha
Helix 8
8
A
252 260Right-handed alpha
Helix 9
9
A
263 284Right-handed alpha
Helix 10
10
A
303 321Right-handed alpha
Helix 11
11
A
346 350Right-handed 310
Helix 12
12
A
356 370Right-handed alpha
Helix 13
13
A
442 447Right-handed 310
Helix 14
14
A
461 471Right-handed alpha
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There are 4 sheets in PDB entry 4A05. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
193 199parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
193 199anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 422first strand
Strand 2
A
376 380parallel
Strand 3
A
327 332parallel
Strand 4
A
289 294parallel
Strand 5
A
245 249parallel
Strand 6
A
193 199parallel
Strand 7
A
162 164anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 422first strand
Strand 2
A
376 380parallel
Strand 3
A
327 332parallel
Strand 4
A
289 294parallel
Strand 5
A
245 249parallel
Strand 6
A
193 199parallel
Strand 7
A
125 126parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il