Analysis of interatomic Contacts of Structural Units in PDB entry:
4A7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4A7P entry

There are 2 chains in PDB entry 4A7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2PRO 435
B
 VAL 1PRO 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 4A7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
35 40Right-handed alpha
Helix 3
3
A
50 61Right-handed alpha
Helix 4
4
A
69 75Right-handed alpha
Helix 5
5
A
97 110Right-handed alpha
Helix 6
6
A
126 139Right-handed alpha
Helix 7
7
A
157 164Right-handed alpha
Helix 8
8
A
174 186Right-handed alpha
Helix 9
9
A
200 232Right-handed alpha
Helix 10
10
A
235 245Right-handed alpha
Helix 11
11
A
264 279Right-handed alpha
Helix 12
12
A
283 308Right-handed alpha
Helix 13
13
A
335 346Right-handed alpha
Helix 14
14
A
357 362Right-handed alpha
Helix 15
15
A
363 365Right-handed 310
Helix 16
16
A
373 379Right-handed alpha
Helix 17
17
A
397 403Right-handed alpha
Helix 18
18
A
418 425Right-handed alpha
Helix 19
19
B
9 22Right-handed alpha
Helix 20
20
B
35 40Right-handed alpha
Helix 21
21
B
50 61Right-handed alpha
Helix 22
22
B
69 75Right-handed alpha
Helix 23
23
B
97 110Right-handed alpha
Helix 24
24
B
126 139Right-handed alpha
Helix 25
25
B
157 164Right-handed alpha
Helix 26
26
B
174 186Right-handed alpha
Helix 27
27
B
200 232Right-handed alpha
Helix 28
28
B
235 245Right-handed alpha
Helix 29
29
B
264 279Right-handed alpha
Helix 30
30
B
283 308Right-handed alpha
Helix 31
31
B
335 346Right-handed alpha
Helix 32
32
B
357 362Right-handed alpha
Helix 33
33
B
363 365Right-handed 310
Helix 34
34
B
373 379Right-handed alpha
Helix 35
35
B
397 403Right-handed alpha
Helix 36
36
B
418 425Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4A7P. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
25 29parallel
Strand 3
A
2 6parallel
Strand 4
A
79 82parallel
Strand 5
A
116 119parallel
Strand 6
A
145 148parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
196 199parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 353first strand
Strand 2
A
316 320parallel
Strand 3
A
383 386parallel
Strand 4
A
410 411parallel
Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
B
25 29parallel
Strand 3
B
2 6parallel
Strand 4
B
79 82parallel
Strand 5
B
116 119parallel
Strand 6
B
145 148parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
196 199parallel
Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 353first strand
Strand 2
B
316 320parallel
Strand 3
B
383 386parallel
Strand 4
B
410 411parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il