Analysis of interatomic Contacts of Structural Units in PDB entry:
4A8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4A8H entry

There are 2 chains in PDB entry 4A8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 341
B
 MET 1ALA 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4A8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 32Right-handed alpha
Helix 2
2
A
53 66Right-handed alpha
Helix 3
3
A
85 97Right-handed alpha
Helix 4
4
A
106 117Right-handed alpha
Helix 5
5
A
130 144Right-handed alpha
Helix 6
6
A
163 176Right-handed alpha
Helix 7
7
A
191 206Right-handed alpha
Helix 8
8
A
214 219Right-handed 310
Helix 9
9
A
238 247Right-handed alpha
Helix 10
10
A
253 261Right-handed alpha
Helix 11
11
A
279 284Right-handed alpha
Helix 12
12
A
289 316Right-handed alpha
Helix 13
13
A
319 337Right-handed alpha
Helix 14
14
B
12 32Right-handed alpha
Helix 15
15
B
53 66Right-handed alpha
Helix 16
16
B
85 97Right-handed alpha
Helix 17
17
B
106 117Right-handed alpha
Helix 18
18
B
130 144Right-handed alpha
Helix 19
19
B
163 176Right-handed alpha
Helix 20
20
B
191 206Right-handed alpha
Helix 21
21
B
214 219Right-handed 310
Helix 22
22
B
238 247Right-handed alpha
Helix 23
23
B
253 261Right-handed alpha
Helix 24
25
B
289 316Right-handed alpha
Helix 25
26
B
319 337Right-handed alpha
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There are 4 sheets in PDB entry 4A8H. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
43 48parallel
Strand 3
A
99 103parallel
Strand 4
A
121 123parallel
Strand 5
A
5 6parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
179 183parallel
Strand 3
A
155 159parallel
Strand 4
A
223 226parallel
Strand 5
A
265 268parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
43 48parallel
Strand 3
B
99 103parallel
Strand 4
B
121 123parallel
Strand 5
B
5 6parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 212first strand
Strand 2
B
179 183parallel
Strand 3
B
155 159parallel
Strand 4
B
223 226parallel
Strand 5
B
265 268parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il