Analysis of interatomic Contacts of Structural Units in PDB entry:
4AAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AAJ entry

There is 1 chain in PDB entry 4AAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0VAL 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 4AAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 19Right-handed alpha
Helix 2
2
A
37 48Right-handed alpha
Helix 3
3
A
60 72Right-handed alpha
Helix 4
4
A
83 95Right-handed alpha
Helix 5
5
A
110 125Right-handed alpha
Helix 6
6
A
144 154Right-handed alpha
Helix 7
7
A
166 175Right-handed alpha
Helix 8
8
A
182 184Right-handed 310
Helix 9
9
A
192 206Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4AAJ. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
178 181parallel
Strand 3
A
156 159parallel
Strand 4
A
129 133parallel
Strand 5
A
97 103parallel
Strand 6
A
75 78parallel
Strand 7
A
52 56parallel
Strand 8
A
23 27parallel
Strand 9
A
2 5parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
190 191anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il