Analysis of interatomic Contacts of Structural Units in PDB entry:
4AAL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AAL entry

There are 2 chains in PDB entry 4AAL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23ASN 346
B
 GLU 23ASN 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4AAL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 33Right-handed alpha
Helix 2
2
A
49 62Right-handed alpha
Helix 3
3
A
63 66Right-handed 310
Helix 4
4
A
72 77Right-handed alpha
Helix 5
5
A
107 111Right-handed 310
Helix 6
6
A
119 127Right-handed alpha
Helix 7
7
A
134 140Right-handed alpha
Helix 8
8
A
140 150Right-handed alpha
Helix 9
9
A
153 162Right-handed alpha
Helix 10
10
A
170 183Right-handed alpha
Helix 11
11
A
190 197Right-handed alpha
Helix 12
12
A
199 203Right-handed 310
Helix 13
13
A
204 217Right-handed alpha
Helix 14
14
A
218 223Right-handed alpha
Helix 15
15
A
250 254Right-handed alpha
Helix 16
16
A
274 278Right-handed 310
Helix 17
17
A
289 298Right-handed alpha
Helix 18
18
A
299 303Right-handed 310
Helix 19
19
A
307 319Right-handed alpha
Helix 20
20
A
320 322Right-handed 310
Helix 21
21
B
23 33Right-handed alpha
Helix 22
22
B
49 62Right-handed alpha
Helix 23
23
B
63 66Right-handed 310
Helix 24
24
B
72 77Right-handed alpha
Helix 25
25
B
107 111Right-handed 310
Helix 26
26
B
119 127Right-handed alpha
Helix 27
27
B
134 140Right-handed alpha
Helix 28
28
B
140 150Right-handed alpha
Helix 29
29
B
153 162Right-handed alpha
Helix 30
30
B
170 184Right-handed alpha
Helix 31
31
B
190 197Right-handed alpha
Helix 32
32
B
199 203Right-handed 310
Helix 33
33
B
204 217Right-handed alpha
Helix 34
34
B
218 222Right-handed 310
Helix 35
35
B
250 254Right-handed alpha
Helix 36
36
B
274 278Right-handed 310
Helix 37
37
B
289 298Right-handed alpha
Helix 38
38
B
299 303Right-handed 310
Helix 39
39
B
307 319Right-handed alpha
Helix 40
40
B
320 322Right-handed 310
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There are 4 sheets in PDB entry 4AAL. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
266 268anti-parallel
Strand 3
A
233 234anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
255 258anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
266 268anti-parallel
Strand 3
B
233 234anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 240first strand
Strand 2
B
255 258anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il