Analysis of interatomic Contacts of Structural Units in PDB entry:
4AB6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AB6 entry

There are 2 chains in PDB entry 4AB6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 94PRO 308
B
 GLY 95GLU 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 4AB6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
103 105Right-handed 310
Helix 2
2
A
106 121Right-handed alpha
Helix 3
3
A
135 142Right-handed alpha
Helix 4
4
A
186 191Right-handed 310
Helix 5
5
A
201 204Right-handed 310
Helix 6
6
A
205 211Right-handed alpha
Helix 7
7
A
212 216Right-handed 310
Helix 8
8
A
226 236Right-handed alpha
Helix 9
9
A
245 253Right-handed alpha
Helix 10
10
A
278 280Right-handed 310
Helix 11
11
A
282 300Right-handed alpha
Helix 12
12
B
103 105Right-handed 310
Helix 13
13
B
106 121Right-handed alpha
Helix 14
14
B
135 142Right-handed alpha
Helix 15
15
B
186 191Right-handed 310
Helix 16
16
B
201 204Right-handed 310
Helix 17
17
B
205 211Right-handed alpha
Helix 18
18
B
212 216Right-handed 310
Helix 19
19
B
226 236Right-handed alpha
Helix 20
20
B
245 254Right-handed alpha
Helix 21
21
B
278 281Right-handed 310
Helix 22
22
B
282 300Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 4AB6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
96 101parallel
Strand 3
A
147 150parallel
Strand 4
A
267 276anti-parallel
Strand 5
A
159 173anti-parallel
Strand 6
A
258 262anti-parallel
Strand 7
A
184 185parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
96 101parallel
Strand 3
A
147 150parallel
Strand 4
A
267 276anti-parallel
Strand 5
A
159 173anti-parallel
Strand 6
A
241 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
159 173anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
96 101parallel
Strand 3
A
147 150parallel
Strand 4
A
267 276anti-parallel
Strand 5
A
159 173anti-parallel
Strand 6
A
303 304anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
221 223parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
96 101parallel
Strand 3
B
147 150parallel
Strand 4
B
267 276anti-parallel
Strand 5
B
159 173anti-parallel
Strand 6
B
258 262anti-parallel
Strand 7
B
184 185parallel
Back to list of sheets
Back to top of page

There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
96 101parallel
Strand 3
B
147 150parallel
Strand 4
B
267 276anti-parallel
Strand 5
B
159 173anti-parallel
Strand 6
B
241 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
159 173anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
96 101parallel
Strand 3
B
147 150parallel
Strand 4
B
267 276anti-parallel
Strand 5
B
159 173anti-parallel
Strand 6
B
303 304anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
221 223parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il