Analysis of interatomic Contacts of Structural Units in PDB entry:
4AB7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4AB7 entry

There are 4 chains in PDB entry 4AB7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 98	ASP 502
B	THR 67	ASP 502
C	THR 67	ASP 502
D	GLN 98	GLY 106

There are138 helices in PDB entry 4AB7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	105	112	Right-handed alpha
Helix 2	2	A	112	126	Right-handed alpha
Helix 3	3	A	137	147	Right-handed alpha
Helix 4	4	A	161	186	Right-handed alpha
Helix 5	5	A	219	228	Right-handed alpha
Helix 6	6	A	249	262	Right-handed alpha
Helix 7	7	A	289	298	Right-handed alpha
Helix 8	8	A	303	320	Right-handed alpha
Helix 9	9	A	333	340	Right-handed alpha
Helix 10	10	A	359	363	Right-handed 310
Helix 11	11	A	365	374	Right-handed alpha
Helix 12	12	A	385	395	Right-handed alpha
Helix 13	13	A	427	433	Right-handed alpha
Helix 14	14	A	434	447	Right-handed alpha
Helix 15	15	A	460	468	Right-handed alpha
Helix 16	16	A	486	500	Right-handed alpha
Helix 17	17	B	67	77	Right-handed alpha
Helix 18	18	B	80	92	Right-handed alpha
Helix 19	19	B	105	112	Right-handed alpha
Helix 20	20	B	112	126	Right-handed alpha
Helix 21	21	B	137	147	Right-handed alpha
Helix 22	22	B	161	186	Right-handed alpha
Helix 23	23	B	219	228	Right-handed alpha
Helix 24	24	B	249	262	Right-handed alpha
Helix 25	25	B	289	298	Right-handed alpha
Helix 26	26	B	303	320	Right-handed alpha
Helix 27	27	B	333	340	Right-handed alpha
Helix 28	28	B	359	363	Right-handed 310
Helix 29	29	B	365	374	Right-handed alpha
Helix 30	30	B	385	395	Right-handed alpha
Helix 31	31	B	427	433	Right-handed alpha
Helix 32	32	B	434	447	Right-handed alpha
Helix 33	33	B	460	468	Right-handed alpha
Helix 34	34	B	486	500	Right-handed alpha
Helix 35	35	C	67	77	Right-handed alpha
Helix 36	36	C	80	92	Right-handed alpha
Helix 37	38	C	105	112	Right-handed alpha
Helix 38	39	C	112	126	Right-handed alpha
Helix 39	40	C	137	147	Right-handed alpha
Helix 40	41	C	161	186	Right-handed alpha
Helix 41	42	C	219	228	Right-handed alpha
Helix 42	43	C	249	262	Right-handed alpha
Helix 43	44	C	289	298	Right-handed alpha
Helix 44	45	C	303	320	Right-handed alpha
Helix 45	46	C	333	340	Right-handed alpha
Helix 46	47	C	359	363	Right-handed 310
Helix 47	48	C	365	374	Right-handed alpha
Helix 48	49	C	385	395	Right-handed alpha
Helix 49	50	C	427	433	Right-handed alpha
Helix 50	51	C	434	447	Right-handed alpha
Helix 51	52	C	460	468	Right-handed alpha
Helix 52	53	C	486	500	Right-handed alpha
Helix 53	54	D	105	112	Right-handed alpha
Helix 54	55	D	112	126	Right-handed alpha
Helix 55	56	D	137	147	Right-handed alpha
Helix 56	57	D	161	186	Right-handed alpha
Helix 57	58	D	219	228	Right-handed alpha
Helix 58	59	D	249	262	Right-handed alpha
Helix 59	60	D	289	298	Right-handed alpha
Helix 60	61	D	303	320	Right-handed alpha
Helix 61	62	D	333	340	Right-handed alpha
Helix 62	63	D	359	363	Right-handed 310
Helix 63	64	D	365	374	Right-handed alpha
Helix 64	65	D	385	395	Right-handed alpha
Helix 65	66	D	427	433	Right-handed alpha
Helix 66	67	D	434	447	Right-handed alpha
Helix 67	68	D	460	468	Right-handed alpha
Helix 68	69	D	486	500	Right-handed alpha
Helix 69	70	E	105	112	Right-handed alpha
Helix 70	71	E	112	126	Right-handed alpha
Helix 71	72	E	137	147	Right-handed alpha
Helix 72	73	E	161	186	Right-handed alpha
Helix 73	74	E	219	228	Right-handed alpha
Helix 74	75	E	249	262	Right-handed alpha
Helix 75	76	E	289	298	Right-handed alpha
Helix 76	77	E	303	320	Right-handed alpha
Helix 77	78	E	333	340	Right-handed alpha
Helix 78	79	E	359	363	Right-handed 310
Helix 79	80	E	365	374	Right-handed alpha
Helix 80	81	E	385	395	Right-handed alpha
Helix 81	82	E	427	433	Right-handed alpha
Helix 82	83	E	434	447	Right-handed alpha
Helix 83	84	E	460	468	Right-handed alpha
Helix 84	85	E	486	500	Right-handed alpha
Helix 85	86	F	67	77	Right-handed alpha
Helix 86	87	F	80	92	Right-handed alpha
Helix 87	88	F	105	112	Right-handed alpha
Helix 88	89	F	112	126	Right-handed alpha
Helix 89	90	F	137	147	Right-handed alpha
Helix 90	91	F	161	186	Right-handed alpha
Helix 91	92	F	219	228	Right-handed alpha
Helix 92	93	F	249	262	Right-handed alpha
Helix 93	94	F	289	298	Right-handed alpha
Helix 94	95	F	303	320	Right-handed alpha
Helix 95	96	F	333	340	Right-handed alpha
Helix 96	97	F	359	363	Right-handed 310
Helix 97	98	F	365	374	Right-handed alpha
Helix 98	99	F	385	395	Right-handed alpha
Helix 99	100	F	427	433	Right-handed alpha
Helix 100	101	F	434	447	Right-handed alpha
Helix 101	102	F	460	468	Right-handed alpha
Helix 102	103	F	486	500	Right-handed alpha
Helix 103	104	G	67	76	Right-handed alpha
Helix 104	105	G	80	92	Right-handed alpha
Helix 105	106	G	105	112	Right-handed alpha
Helix 106	107	G	112	126	Right-handed alpha
Helix 107	108	G	137	147	Right-handed alpha
Helix 108	109	G	161	186	Right-handed alpha
Helix 109	110	G	219	228	Right-handed alpha
Helix 110	111	G	249	262	Right-handed alpha
Helix 111	112	G	289	298	Right-handed alpha
Helix 112	113	G	303	320	Right-handed alpha
Helix 113	114	G	333	340	Right-handed alpha
Helix 114	115	G	359	363	Right-handed 310
Helix 115	116	G	365	374	Right-handed alpha
Helix 116	117	G	385	395	Right-handed alpha
Helix 117	118	G	427	433	Right-handed alpha
Helix 118	119	G	434	447	Right-handed alpha
Helix 119	120	G	460	468	Right-handed alpha
Helix 120	121	G	486	500	Right-handed alpha
Helix 121	122	H	81	94	Right-handed alpha
Helix 122	123	H	96	98	Right-handed 310
Helix 123	124	H	105	112	Right-handed alpha
Helix 124	125	H	112	126	Right-handed alpha
Helix 125	126	H	137	147	Right-handed alpha
Helix 126	127	H	161	186	Right-handed alpha
Helix 127	128	H	219	228	Right-handed alpha
Helix 128	129	H	249	262	Right-handed alpha
Helix 129	130	H	289	298	Right-handed alpha
Helix 130	131	H	303	320	Right-handed alpha
Helix 131	132	H	333	340	Right-handed alpha
Helix 132	133	H	359	363	Right-handed 310
Helix 133	134	H	365	374	Right-handed alpha
Helix 134	135	H	385	395	Right-handed alpha
Helix 135	136	H	427	433	Right-handed alpha
Helix 136	137	H	434	447	Right-handed alpha
Helix 137	138	H	460	468	Right-handed alpha
Helix 138	139	H	486	500	Right-handed alpha

There are 44 sheets in PDB entry 4AB7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, A, DB, C, DD, DE, EA, EB, EC, ED, EE, EF, FA, FB, FC, FD, FE, FF, GA, GB, GC, GD, GE, HA, HB, HC, HD, HE,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	231	235	parallel
Strand 3	A	131	134	parallel
Strand 4	A	100	104	parallel
Strand 5	A	265	270	parallel
Strand 6	A	325	330	parallel
Strand 7	A	346	349	anti-parallel
Strand 8	A	286	288	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	157	158	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	202	first strand
Strand 2	A	212	217	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	245	247	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	283	284	anti-parallel

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There are 14 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	357	first strand
Strand 2	A	398	402	anti-parallel
Strand 3	A	408	413	anti-parallel
Strand 4	A	420	426	anti-parallel
Strand 5	A	450	455	parallel
Strand 6	A	477	482	anti-parallel
Strand 7	A	470	474	anti-parallel
Strand 8	D	470	474	anti-parallel
Strand 9	D	477	482	anti-parallel
Strand 10	D	450	455	anti-parallel
Strand 11	D	420	426	parallel
Strand 12	D	408	413	anti-parallel
Strand 13	D	398	402	anti-parallel
Strand 14	D	355	357	anti-parallel

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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	193	first strand
Strand 2	B	231	235	parallel
Strand 3	B	131	134	parallel
Strand 4	B	100	104	parallel
Strand 5	B	265	270	parallel
Strand 6	B	325	330	parallel
Strand 7	B	346	349	anti-parallel
Strand 8	B	286	288	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	157	158	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	202	first strand
Strand 2	B	212	217	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	239	first strand
Strand 2	B	245	247	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	276	first strand
Strand 2	B	283	284	anti-parallel

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There are 14 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	357	first strand
Strand 2	B	398	402	anti-parallel
Strand 3	B	408	413	anti-parallel
Strand 4	B	420	426	anti-parallel
Strand 5	B	450	455	parallel
Strand 6	B	477	482	anti-parallel
Strand 7	B	470	474	anti-parallel
Strand 8	C	470	474	anti-parallel
Strand 9	C	477	482	anti-parallel
Strand 10	C	450	455	anti-parallel
Strand 11	C	420	426	anti-parallel
Strand 12	C	408	413	anti-parallel
Strand 13	C	398	402	anti-parallel
Strand 14	C	355	357	parallel

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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	193	first strand
Strand 2	C	231	235	parallel
Strand 3	C	131	134	parallel
Strand 4	C	100	104	parallel
Strand 5	C	265	270	parallel
Strand 6	C	325	330	parallel
Strand 7	C	346	349	anti-parallel
Strand 8	C	286	288	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	157	158	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	202	first strand
Strand 2	C	212	217	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	245	247	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	276	first strand
Strand 2	C	283	284	anti-parallel

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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	193	first strand
Strand 2	D	231	235	parallel
Strand 3	D	131	134	parallel
Strand 4	D	100	104	parallel
Strand 5	D	265	270	parallel
Strand 6	D	326	330	parallel
Strand 7	D	346	349	anti-parallel
Strand 8	D	286	288	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	157	158	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	202	first strand
Strand 2	D	212	217	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	239	first strand
Strand 2	D	245	247	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	276	first strand
Strand 2	D	283	284	anti-parallel

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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	190	193	first strand
Strand 2	E	231	235	parallel
Strand 3	E	131	134	parallel
Strand 4	E	100	104	parallel
Strand 5	E	265	270	parallel
Strand 6	E	325	330	parallel
Strand 7	E	346	349	anti-parallel
Strand 8	E	286	288	parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	154	first strand
Strand 2	E	157	158	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	202	first strand
Strand 2	E	212	217	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	239	first strand
Strand 2	E	245	247	anti-parallel

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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	275	276	first strand
Strand 2	E	283	284	anti-parallel

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There are 14 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	355	357	first strand
Strand 2	E	398	402	anti-parallel
Strand 3	E	408	413	anti-parallel
Strand 4	E	420	426	anti-parallel
Strand 5	E	450	455	parallel
Strand 6	E	477	482	anti-parallel
Strand 7	E	470	474	anti-parallel
Strand 8	H	470	474	anti-parallel
Strand 9	H	477	482	anti-parallel
Strand 10	H	450	455	anti-parallel
Strand 11	H	420	426	parallel
Strand 12	H	408	413	anti-parallel
Strand 13	H	398	402	anti-parallel
Strand 14	H	355	357	anti-parallel

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There are 8 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	190	193	first strand
Strand 2	F	231	235	parallel
Strand 3	F	131	134	parallel
Strand 4	F	100	104	parallel
Strand 5	F	265	270	parallel
Strand 6	F	325	330	parallel
Strand 7	F	346	349	anti-parallel
Strand 8	F	286	288	parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	157	158	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	202	first strand
Strand 2	F	212	217	anti-parallel

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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	237	239	first strand
Strand 2	F	245	247	anti-parallel

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There are 2 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	275	276	first strand
Strand 2	F	283	284	anti-parallel

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There are 14 strands in FF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	357	first strand
Strand 2	F	398	403	anti-parallel
Strand 3	F	408	413	anti-parallel
Strand 4	F	420	426	anti-parallel
Strand 5	F	450	455	parallel
Strand 6	F	477	482	anti-parallel
Strand 7	F	470	474	anti-parallel
Strand 8	G	470	474	anti-parallel
Strand 9	G	477	482	anti-parallel
Strand 10	G	450	455	anti-parallel
Strand 11	G	420	426	parallel
Strand 12	G	408	413	anti-parallel
Strand 13	G	398	402	anti-parallel
Strand 14	G	355	357	anti-parallel

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There are 8 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	190	193	first strand
Strand 2	G	231	235	parallel
Strand 3	G	131	134	parallel
Strand 4	G	100	104	parallel
Strand 5	G	265	270	parallel
Strand 6	G	325	330	parallel
Strand 7	G	346	349	anti-parallel
Strand 8	G	286	288	parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	154	first strand
Strand 2	G	157	158	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	198	202	first strand
Strand 2	G	212	217	anti-parallel

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There are 2 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	237	239	first strand
Strand 2	G	245	247	anti-parallel

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There are 2 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	275	276	first strand
Strand 2	G	283	284	anti-parallel

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There are 8 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	190	193	first strand
Strand 2	H	231	235	parallel
Strand 3	H	131	134	parallel
Strand 4	H	100	104	parallel
Strand 5	H	265	270	parallel
Strand 6	H	326	330	parallel
Strand 7	H	346	349	anti-parallel
Strand 8	H	286	288	parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	154	first strand
Strand 2	H	157	158	anti-parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	198	202	first strand
Strand 2	H	212	217	anti-parallel

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There are 2 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	237	239	first strand
Strand 2	H	245	247	anti-parallel

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There are 2 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	275	276	first strand
Strand 2	H	283	284	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4AB7

Analysis of interatomic Contacts of Structural Units in PDB entry:
4AB7