Analysis of interatomic Contacts of Structural Units in PDB entry:
4AD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AD3 entry

There are 4 chains in PDB entry 4AD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 35LYS 379
B
 THR 35GLN 380
C
 GLU 36LYS 379
D
 LEU 37LYS 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 4AD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 56Right-handed alpha
Helix 2
2
A
102 117Right-handed alpha
Helix 3
3
A
130 147Right-handed alpha
Helix 4
4
A
162 178Right-handed alpha
Helix 5
5
A
196 200Right-handed 310
Helix 6
6
A
201 210Right-handed alpha
Helix 7
7
A
233 245Right-handed alpha
Helix 8
8
A
263 265Right-handed 310
Helix 9
9
A
266 277Right-handed alpha
Helix 10
10
A
298 302Right-handed 310
Helix 11
11
A
305 307Right-handed 310
Helix 12
12
A
308 321Right-handed alpha
Helix 13
13
A
333 337Right-handed 310
Helix 14
14
A
362 379Right-handed alpha
Helix 15
15
B
51 56Right-handed alpha
Helix 16
16
B
102 117Right-handed alpha
Helix 17
17
B
132 146Right-handed alpha
Helix 18
18
B
162 178Right-handed alpha
Helix 19
19
B
196 200Right-handed 310
Helix 20
20
B
201 210Right-handed alpha
Helix 21
21
B
233 245Right-handed alpha
Helix 22
22
B
263 265Right-handed 310
Helix 23
23
B
266 277Right-handed alpha
Helix 24
24
B
298 302Right-handed 310
Helix 25
25
B
305 307Right-handed 310
Helix 26
26
B
308 321Right-handed alpha
Helix 27
27
B
333 337Right-handed 310
Helix 28
28
B
362 379Right-handed alpha
Helix 29
29
C
102 117Right-handed alpha
Helix 30
30
C
132 147Right-handed alpha
Helix 31
31
C
162 178Right-handed alpha
Helix 32
32
C
196 200Right-handed 310
Helix 33
33
C
201 210Right-handed alpha
Helix 34
34
C
233 245Right-handed alpha
Helix 35
35
C
263 265Right-handed 310
Helix 36
36
C
266 277Right-handed alpha
Helix 37
37
C
298 302Right-handed 310
Helix 38
38
C
305 307Right-handed 310
Helix 39
39
C
308 321Right-handed alpha
Helix 40
40
C
333 337Right-handed 310
Helix 41
41
C
362 379Right-handed alpha
Helix 42
42
D
102 117Right-handed alpha
Helix 43
43
D
131 146Right-handed alpha
Helix 44
44
D
162 178Right-handed alpha
Helix 45
45
D
196 200Right-handed 310
Helix 46
46
D
201 210Right-handed alpha
Helix 47
47
D
233 245Right-handed alpha
Helix 48
48
D
263 265Right-handed 310
Helix 49
49
D
266 278Right-handed alpha
Helix 50
50
D
298 302Right-handed 310
Helix 51
51
D
305 307Right-handed 310
Helix 52
52
D
308 321Right-handed alpha
Helix 53
53
D
333 337Right-handed 310
Helix 54
54
D
362 379Right-handed alpha
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There are 8 sheets in PDB entry 4AD3. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
A
248 250parallel
Strand 3
A
225 229parallel
Strand 4
A
191 194parallel
Strand 5
A
150 155parallel
Strand 6
A
118 125parallel
Strand 7
A
38 45parallel
Strand 8
A
326 328parallel
Strand 9
A
284 285parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
79 81anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 282first strand
Strand 2
B
248 250parallel
Strand 3
B
225 229parallel
Strand 4
B
191 194parallel
Strand 5
B
150 155parallel
Strand 6
B
118 125parallel
Strand 7
B
38 45parallel
Strand 8
B
326 328parallel
Strand 9
B
284 285parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
79 81anti-parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
280 282first strand
Strand 2
C
248 250parallel
Strand 3
C
225 229parallel
Strand 4
C
191 194parallel
Strand 5
C
150 155parallel
Strand 6
C
118 125parallel
Strand 7
C
38 45parallel
Strand 8
C
326 328parallel
Strand 9
C
284 285parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 64first strand
Strand 2
C
79 80anti-parallel
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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
280 282first strand
Strand 2
D
248 250parallel
Strand 3
D
225 229parallel
Strand 4
D
191 194parallel
Strand 5
D
150 155parallel
Strand 6
D
118 125parallel
Strand 7
D
38 45parallel
Strand 8
D
326 328parallel
Strand 9
D
284 285parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 64first strand
Strand 2
D
79 81anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il