Analysis of interatomic Contacts of Structural Units in PDB entry:
4AD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AD7 entry

There are 4 chains in PDB entry 4AD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29ASN 474
B
 SER 29ASP 475
C
 SER 29ASN 474
D
 SER 29LEU 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 69 helices in PDB entry 4AD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 42Right-handed alpha
Helix 2
2
A
70 130Right-handed alpha
Helix 3
3
A
131 153Right-handed alpha
Helix 4
4
A
158 172Right-handed alpha
Helix 5
5
A
207 238Right-handed alpha
Helix 6
6
A
243 255Right-handed alpha
Helix 7
7
A
255 260Right-handed alpha
Helix 8
8
A
268 280Right-handed alpha
Helix 9
9
A
282 285Right-handed 310
Helix 10
10
A
286 301Right-handed alpha
Helix 11
11
A
302 305Right-handed 310
Helix 12
12
A
309 316Right-handed alpha
Helix 13
13
A
374 390Right-handed alpha
Helix 14
14
A
391 403Right-handed alpha
Helix 15
15
A
433 437Right-handed 310
Helix 16
16
A
450 473Right-handed alpha
Helix 17
17
B
32 42Right-handed alpha
Helix 18
18
B
45 49Right-handed 310
Helix 19
19
B
70 130Right-handed alpha
Helix 20
20
B
131 136Right-handed alpha
Helix 21
21
B
137 154Right-handed alpha
Helix 22
22
B
159 179Right-handed alpha
Helix 23
23
B
186 200Right-handed alpha
Helix 24
24
B
204 238Right-handed alpha
Helix 25
25
B
243 255Right-handed alpha
Helix 26
26
B
255 260Right-handed alpha
Helix 27
27
B
268 285Right-handed alpha
Helix 28
28
B
286 300Right-handed alpha
Helix 29
29
B
301 305Right-handed 310
Helix 30
30
B
309 344Right-handed alpha
Helix 31
31
B
373 389Right-handed alpha
Helix 32
32
B
395 404Right-handed alpha
Helix 33
33
B
433 437Right-handed 310
Helix 34
34
B
450 472Right-handed alpha
Helix 35
35
C
32 42Right-handed alpha
Helix 36
36
C
70 131Right-handed alpha
Helix 37
37
C
131 136Right-handed alpha
Helix 38
38
C
137 153Right-handed alpha
Helix 39
39
C
159 179Right-handed alpha
Helix 40
40
C
204 238Right-handed alpha
Helix 41
41
C
243 255Right-handed alpha
Helix 42
42
C
255 260Right-handed alpha
Helix 43
43
C
268 280Right-handed alpha
Helix 44
44
C
280 285Right-handed alpha
Helix 45
45
C
286 300Right-handed alpha
Helix 46
46
C
301 304Right-handed 310
Helix 47
47
C
316 331Right-handed alpha
Helix 48
48
C
373 390Right-handed alpha
Helix 49
49
C
391 404Right-handed alpha
Helix 50
50
C
433 437Right-handed 310
Helix 51
51
C
450 473Right-handed alpha
Helix 52
52
D
32 41Right-handed alpha
Helix 53
53
D
70 130Right-handed alpha
Helix 54
54
D
131 136Right-handed alpha
Helix 55
55
D
137 153Right-handed alpha
Helix 56
56
D
158 179Right-handed alpha
Helix 57
57
D
186 200Right-handed alpha
Helix 58
58
D
204 239Right-handed alpha
Helix 59
59
D
243 254Right-handed alpha
Helix 60
60
D
255 260Right-handed alpha
Helix 61
61
D
268 280Right-handed alpha
Helix 62
62
D
280 285Right-handed alpha
Helix 63
63
D
286 301Right-handed alpha
Helix 64
64
D
302 305Right-handed 310
Helix 65
65
D
309 344Right-handed alpha
Helix 66
66
D
374 389Right-handed alpha
Helix 67
67
D
395 404Right-handed alpha
Helix 68
68
D
433 437Right-handed 310
Helix 69
69
D
450 472Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4AD7. Click on sheet of interest to get list of strands forming it: AA, CA, A,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 416first strand
Strand 2
A
421 422anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
415 416first strand
Strand 2
C
421 422anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
415 416first strand
Strand 2
D
421 422anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il