Analysis of interatomic Contacts of Structural Units in PDB entry:
4AD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AD8 entry

There is 1 chain in PDB entry 4AD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32ALA 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 4AD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 71Right-handed alpha
Helix 2
2
A
71 78Right-handed alpha
Helix 3
3
A
83 86Right-handed 310
Helix 4
4
A
131 140Right-handed alpha
Helix 5
5
A
147 153Right-handed 310
Helix 6
6
A
156 166Right-handed alpha
Helix 7
7
A
168 217Right-handed alpha
Helix 8
8
A
222 237Right-handed alpha
Helix 9
9
A
312 331Right-handed alpha
Helix 10
10
A
333 399Right-handed alpha
Helix 11
11
A
448 462Right-handed alpha
Helix 12
12
A
479 496Right-handed alpha
Helix 13
13
A
504 511Right-handed alpha
Helix 14
14
A
535 546Right-handed alpha
Helix 15
15
A
551 563Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4AD8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
93 99anti-parallel
Strand 4
A
110 116anti-parallel
Strand 5
A
122 124anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
467 470parallel
Strand 3
A
497 501parallel
Strand 4
A
56 61parallel
Strand 5
A
513 518parallel
Strand 6
A
529 532anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 414first strand
Strand 2
A
424 431anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
525 526anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il