Analysis of interatomic Contacts of Structural Units in PDB entry:
4AD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AD9 entry

There are 5 chains in PDB entry 4AD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 288
B
 ALA 2HIS 287
C
 VAL 4LEU 288
D
 MET 1LEU 288
E
 ALA 2ALA 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 4AD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 66Right-handed alpha
Helix 2
2
A
79 84Right-handed alpha
Helix 3
3
A
85 93Right-handed alpha
Helix 4
4
A
176 191Right-handed alpha
Helix 5
5
A
205 231Right-handed alpha
Helix 6
6
A
237 246Right-handed alpha
Helix 7
7
A
250 252Right-handed 310
Helix 8
8
A
253 271Right-handed alpha
Helix 9
9
B
52 66Right-handed alpha
Helix 10
10
B
79 84Right-handed alpha
Helix 11
11
B
85 93Right-handed alpha
Helix 12
12
B
176 191Right-handed alpha
Helix 13
13
B
205 231Right-handed alpha
Helix 14
14
B
237 246Right-handed alpha
Helix 15
15
B
250 252Right-handed 310
Helix 16
16
B
253 271Right-handed alpha
Helix 17
17
C
52 66Right-handed alpha
Helix 18
18
C
79 84Right-handed alpha
Helix 19
19
C
85 93Right-handed alpha
Helix 20
20
C
176 191Right-handed alpha
Helix 21
21
C
205 231Right-handed alpha
Helix 22
22
C
237 246Right-handed alpha
Helix 23
23
C
250 252Right-handed 310
Helix 24
24
C
253 271Right-handed alpha
Helix 25
25
D
52 66Right-handed alpha
Helix 26
26
D
79 84Right-handed alpha
Helix 27
27
D
85 93Right-handed alpha
Helix 28
28
D
176 191Right-handed alpha
Helix 29
29
D
205 231Right-handed alpha
Helix 30
30
D
237 246Right-handed alpha
Helix 31
31
D
250 252Right-handed 310
Helix 32
32
D
253 271Right-handed alpha
Helix 33
33
E
52 66Right-handed alpha
Helix 34
34
E
79 84Right-handed alpha
Helix 35
35
E
85 93Right-handed alpha
Helix 36
36
E
176 191Right-handed alpha
Helix 37
37
E
205 231Right-handed alpha
Helix 38
38
E
237 246Right-handed alpha
Helix 39
39
E
250 252Right-handed 310
Helix 40
40
E
253 271Right-handed alpha
Helix 41
41
F
52 66Right-handed alpha
Helix 42
42
F
79 84Right-handed alpha
Helix 43
43
F
85 93Right-handed alpha
Helix 44
44
F
176 191Right-handed alpha
Helix 45
45
F
205 231Right-handed alpha
Helix 46
46
F
237 246Right-handed alpha
Helix 47
47
F
250 252Right-handed 310
Helix 48
48
F
253 271Right-handed alpha
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There are 18 sheets in PDB entry 4AD9. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C, EA, EB, EC, FA, FB, FC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
15 19anti-parallel
Strand 3
A
32 36anti-parallel
Strand 4
A
42 45anti-parallel
Strand 5
A
70 74parallel
Strand 6
A
101 103parallel
Strand 7
A
121 123parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
135 141anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
159 163anti-parallel
Strand 5
A
194 197parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 276first strand
Strand 2
A
284 286anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
15 19anti-parallel
Strand 3
B
32 36anti-parallel
Strand 4
B
42 45anti-parallel
Strand 5
B
70 74parallel
Strand 6
B
101 103parallel
Strand 7
B
121 123parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 132first strand
Strand 2
B
135 141anti-parallel
Strand 3
B
150 154anti-parallel
Strand 4
B
159 163anti-parallel
Strand 5
B
194 197parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 236first strand
Strand 2
B
284 286anti-parallel
Strand 3
B
274 275anti-parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
15 19anti-parallel
Strand 3
C
32 36anti-parallel
Strand 4
C
42 45anti-parallel
Strand 5
C
70 74parallel
Strand 6
C
101 103parallel
Strand 7
C
121 123parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 132first strand
Strand 2
C
135 141anti-parallel
Strand 3
C
150 154anti-parallel
Strand 4
C
159 163anti-parallel
Strand 5
C
194 197parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
274 276first strand
Strand 2
C
284 286anti-parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 10first strand
Strand 2
D
15 19anti-parallel
Strand 3
D
32 36anti-parallel
Strand 4
D
42 45anti-parallel
Strand 5
D
70 74parallel
Strand 6
D
101 103parallel
Strand 7
D
121 123parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
129 132first strand
Strand 2
D
135 141anti-parallel
Strand 3
D
150 154anti-parallel
Strand 4
D
159 163anti-parallel
Strand 5
D
194 197parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
235 236first strand
Strand 2
D
284 286anti-parallel
Strand 3
D
274 276anti-parallel
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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 10first strand
Strand 2
E
15 19anti-parallel
Strand 3
E
32 36anti-parallel
Strand 4
E
42 45anti-parallel
Strand 5
E
70 74parallel
Strand 6
E
101 103parallel
Strand 7
E
121 123parallel
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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
129 132first strand
Strand 2
E
135 141anti-parallel
Strand 3
E
150 154anti-parallel
Strand 4
E
159 163anti-parallel
Strand 5
E
194 197parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
275 276first strand
Strand 2
E
284 285anti-parallel
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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 10first strand
Strand 2
F
15 19anti-parallel
Strand 3
F
32 36anti-parallel
Strand 4
F
42 45anti-parallel
Strand 5
F
70 74parallel
Strand 6
F
101 103parallel
Strand 7
F
121 123parallel
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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
129 132first strand
Strand 2
F
135 141anti-parallel
Strand 3
F
150 154anti-parallel
Strand 4
F
159 163anti-parallel
Strand 5
F
194 197parallel
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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
274 276first strand
Strand 2
F
284 286anti-parallel
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