Analysis of interatomic Contacts of Structural Units in PDB entry:
4ADE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ADE entry

There are 2 chains in PDB entry 4ADE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3SER 402
B
 ALA 21SER 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4ADE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 14Right-handed alpha
Helix 2
2
A
45 50Right-handed alpha
Helix 3
3
A
57 69Right-handed alpha
Helix 4
4
A
80 94Right-handed alpha
Helix 5
5
A
104 124Right-handed alpha
Helix 6
6
A
142 149Right-handed alpha
Helix 7
7
A
151 156Right-handed alpha
Helix 8
8
A
157 159Right-handed 310
Helix 9
9
A
172 180Right-handed alpha
Helix 10
10
A
202 217Right-handed alpha
Helix 11
11
A
236 242Right-handed alpha
Helix 12
12
A
251 256Right-handed 310
Helix 13
13
A
266 271Right-handed alpha
Helix 14
14
A
285 300Right-handed alpha
Helix 15
15
A
301 327Right-handed alpha
Helix 16
16
A
345 348Right-handed 310
Helix 17
17
A
350 362Right-handed alpha
Helix 18
18
A
382 402Right-handed alpha
Helix 19
19
B
45 50Right-handed alpha
Helix 20
20
B
57 69Right-handed alpha
Helix 21
21
B
80 94Right-handed alpha
Helix 22
22
B
104 122Right-handed alpha
Helix 23
23
B
172 178Right-handed alpha
Helix 24
24
B
202 217Right-handed alpha
Helix 25
25
B
236 242Right-handed alpha
Helix 26
26
B
253 256Right-handed 310
Helix 27
27
B
266 271Right-handed alpha
Helix 28
28
B
285 300Right-handed alpha
Helix 29
29
B
301 327Right-handed alpha
Helix 30
30
B
345 348Right-handed 310
Helix 31
31
B
350 361Right-handed alpha
Helix 32
32
B
382 401Right-handed alpha
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There are 8 sheets in PDB entry 4ADE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
32 35anti-parallel
Strand 3
A
40 43anti-parallel
Strand 4
A
363 364parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
261 265anti-parallel
Strand 3
A
247 250anti-parallel
Strand 4
A
219 223parallel
Strand 5
A
184 189parallel
Strand 6
A
130 134parallel
Strand 7
A
165 168parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
199 200anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 335first strand
Strand 2
A
338 343anti-parallel
Strand 3
A
372 375anti-parallel
Strand 4
A
366 367anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
32 35anti-parallel
Strand 3
B
40 43anti-parallel
Strand 4
B
363 364parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 102first strand
Strand 2
B
261 265anti-parallel
Strand 3
B
247 251anti-parallel
Strand 4
B
219 223parallel
Strand 5
B
184 189parallel
Strand 6
B
130 134parallel
Strand 7
B
165 168parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
199 200anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 333first strand
Strand 2
B
339 343anti-parallel
Strand 3
B
372 375anti-parallel
Strand 4
B
366 367anti-parallel
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