Analysis of interatomic Contacts of Structural Units in PDB entry:
4ADS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ADS entry

There are 5 chains in PDB entry 4ADS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	ALA 284
B	ASP 3	ALA 284
C	ASP 3	ALA 284
D	ASP 3	ALA 284
E	ASP 3	GLU 184

There are132 helices in PDB entry 4ADS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	19	Right-handed alpha
Helix 2	2	A	30	41	Right-handed alpha
Helix 3	3	A	52	58	Right-handed alpha
Helix 4	4	A	66	75	Right-handed alpha
Helix 5	5	A	89	99	Right-handed alpha
Helix 6	6	A	120	124	Right-handed 310
Helix 7	7	A	134	144	Right-handed alpha
Helix 8	8	A	160	178	Right-handed alpha
Helix 9	9	A	184	193	Right-handed alpha
Helix 10	10	A	195	206	Right-handed alpha
Helix 11	11	A	220	230	Right-handed alpha
Helix 12	12	A	238	243	Right-handed alpha
Helix 13	13	A	246	260	Right-handed alpha
Helix 14	14	A	263	270	Right-handed alpha
Helix 15	15	B	8	19	Right-handed alpha
Helix 16	16	B	30	41	Right-handed alpha
Helix 17	17	B	52	58	Right-handed alpha
Helix 18	18	B	66	75	Right-handed alpha
Helix 19	19	B	89	99	Right-handed alpha
Helix 20	20	B	120	124	Right-handed 310
Helix 21	21	B	134	144	Right-handed alpha
Helix 22	22	B	160	178	Right-handed alpha
Helix 23	23	B	184	193	Right-handed alpha
Helix 24	24	B	195	206	Right-handed alpha
Helix 25	25	B	220	230	Right-handed alpha
Helix 26	26	B	238	243	Right-handed alpha
Helix 27	27	B	246	260	Right-handed alpha
Helix 28	28	B	263	270	Right-handed alpha
Helix 29	29	C	8	19	Right-handed alpha
Helix 30	30	C	30	41	Right-handed alpha
Helix 31	31	C	52	58	Right-handed alpha
Helix 32	32	C	66	75	Right-handed alpha
Helix 33	33	C	89	99	Right-handed alpha
Helix 34	34	C	120	124	Right-handed 310
Helix 35	35	C	134	144	Right-handed alpha
Helix 36	36	C	160	178	Right-handed alpha
Helix 37	37	C	184	193	Right-handed alpha
Helix 38	38	C	195	206	Right-handed alpha
Helix 39	39	C	220	230	Right-handed alpha
Helix 40	40	C	238	243	Right-handed alpha
Helix 41	41	C	246	260	Right-handed alpha
Helix 42	42	C	263	270	Right-handed alpha
Helix 43	43	D	8	19	Right-handed alpha
Helix 44	44	D	30	41	Right-handed alpha
Helix 45	45	D	52	58	Right-handed alpha
Helix 46	46	D	66	75	Right-handed alpha
Helix 47	47	D	89	99	Right-handed alpha
Helix 48	48	D	120	124	Right-handed 310
Helix 49	49	D	134	144	Right-handed alpha
Helix 50	50	D	160	178	Right-handed alpha
Helix 51	51	D	184	193	Right-handed alpha
Helix 52	52	D	195	206	Right-handed alpha
Helix 53	53	D	220	230	Right-handed alpha
Helix 54	54	D	238	243	Right-handed alpha
Helix 55	55	D	246	260	Right-handed alpha
Helix 56	56	D	263	270	Right-handed alpha
Helix 57	57	E	8	19	Right-handed alpha
Helix 58	58	E	30	41	Right-handed alpha
Helix 59	59	E	52	58	Right-handed alpha
Helix 60	60	E	66	75	Right-handed alpha
Helix 61	61	E	89	99	Right-handed alpha
Helix 62	62	E	120	124	Right-handed 310
Helix 63	63	E	134	144	Right-handed alpha
Helix 64	64	E	160	178	Right-handed alpha
Helix 65	65	E	184	193	Right-handed alpha
Helix 66	66	E	195	206	Right-handed alpha
Helix 67	67	E	220	230	Right-handed alpha
Helix 68	68	E	238	243	Right-handed alpha
Helix 69	69	E	246	260	Right-handed alpha
Helix 70	70	E	263	270	Right-handed alpha
Helix 71	71	F	8	19	Right-handed alpha
Helix 72	72	F	30	41	Right-handed alpha
Helix 73	73	F	52	58	Right-handed alpha
Helix 74	74	F	66	75	Right-handed alpha
Helix 75	75	F	89	99	Right-handed alpha
Helix 76	76	F	120	124	Right-handed 310
Helix 77	77	F	134	144	Right-handed alpha
Helix 78	78	F	160	178	Right-handed alpha
Helix 79	79	F	184	193	Right-handed alpha
Helix 80	80	F	195	206	Right-handed alpha
Helix 81	81	F	220	230	Right-handed alpha
Helix 82	82	F	238	243	Right-handed alpha
Helix 83	83	F	246	260	Right-handed alpha
Helix 84	84	F	263	270	Right-handed alpha
Helix 85	85	G	14	24	Right-handed alpha
Helix 86	86	G	37	43	Right-handed alpha
Helix 87	87	G	53	61	Right-handed alpha
Helix 88	88	G	62	78	Right-handed alpha
Helix 89	89	G	86	93	Right-handed alpha
Helix 90	90	G	106	110	Right-handed 310
Helix 91	91	G	196	200	Right-handed 310
Helix 92	92	G	203	219	Right-handed alpha
Helix 93	93	H	14	24	Right-handed alpha
Helix 94	94	H	37	43	Right-handed alpha
Helix 95	95	H	53	61	Right-handed alpha
Helix 96	96	H	62	78	Right-handed alpha
Helix 97	97	H	86	93	Right-handed alpha
Helix 98	98	H	106	110	Right-handed 310
Helix 99	99	H	196	200	Right-handed 310
Helix 100	100	H	203	219	Right-handed alpha
Helix 101	101	I	14	24	Right-handed alpha
Helix 102	102	I	37	43	Right-handed alpha
Helix 103	103	I	53	61	Right-handed alpha
Helix 104	104	I	62	78	Right-handed alpha
Helix 105	105	I	86	93	Right-handed alpha
Helix 106	106	I	106	110	Right-handed 310
Helix 107	107	I	196	200	Right-handed 310
Helix 108	108	I	203	219	Right-handed alpha
Helix 109	109	J	14	24	Right-handed alpha
Helix 110	110	J	37	43	Right-handed alpha
Helix 111	111	J	53	61	Right-handed alpha
Helix 112	112	J	62	78	Right-handed alpha
Helix 113	113	J	86	93	Right-handed alpha
Helix 114	114	J	106	110	Right-handed 310
Helix 115	115	J	196	200	Right-handed 310
Helix 116	116	J	203	219	Right-handed alpha
Helix 117	117	K	14	24	Right-handed alpha
Helix 118	118	K	37	43	Right-handed alpha
Helix 119	119	K	53	61	Right-handed alpha
Helix 120	120	K	62	78	Right-handed alpha
Helix 121	121	K	86	93	Right-handed alpha
Helix 122	122	K	106	110	Right-handed 310
Helix 123	123	K	196	200	Right-handed 310
Helix 124	124	K	203	219	Right-handed alpha
Helix 125	125	L	14	24	Right-handed alpha
Helix 126	126	L	37	43	Right-handed alpha
Helix 127	127	L	53	61	Right-handed alpha
Helix 128	128	L	62	78	Right-handed alpha
Helix 129	129	L	86	93	Right-handed alpha
Helix 130	130	L	106	110	Right-handed 310
Helix 131	131	L	196	200	Right-handed 310
Helix 132	132	L	203	219	Right-handed alpha

There are 24 sheets in PDB entry 4ADS. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, GB, GC, HA, HB, HC, IA, IB, IC, JA, JB, JC, KA, KB, KC, LA, LB, LC,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	28	first strand
Strand 2	A	234	237	parallel
Strand 3	A	211	215	parallel
Strand 4	A	148	151	parallel
Strand 5	A	128	132	parallel
Strand 6	A	103	107	parallel
Strand 7	A	80	86	parallel
Strand 8	A	44	47	parallel
Strand 9	A	24	28	parallel

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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	28	first strand
Strand 2	B	234	237	parallel
Strand 3	B	211	215	parallel
Strand 4	B	148	151	parallel
Strand 5	B	128	132	parallel
Strand 6	B	103	107	parallel
Strand 7	B	80	86	parallel
Strand 8	B	44	47	parallel
Strand 9	B	24	28	parallel

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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	28	first strand
Strand 2	C	234	237	parallel
Strand 3	C	211	215	parallel
Strand 4	C	148	151	parallel
Strand 5	C	128	132	parallel
Strand 6	C	103	107	parallel
Strand 7	C	80	86	parallel
Strand 8	C	44	47	parallel
Strand 9	C	24	28	parallel

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	28	first strand
Strand 2	D	234	237	parallel
Strand 3	D	211	215	parallel
Strand 4	D	148	151	parallel
Strand 5	D	128	132	parallel
Strand 6	D	103	107	parallel
Strand 7	D	80	86	parallel
Strand 8	D	44	47	parallel
Strand 9	D	24	28	parallel

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There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	28	first strand
Strand 2	E	234	237	parallel
Strand 3	E	211	215	parallel
Strand 4	E	148	151	parallel
Strand 5	E	128	132	parallel
Strand 6	E	103	107	parallel
Strand 7	E	80	86	parallel
Strand 8	E	44	47	parallel
Strand 9	E	24	28	parallel

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There are 9 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	28	first strand
Strand 2	F	234	237	parallel
Strand 3	F	211	215	parallel
Strand 4	F	148	151	parallel
Strand 5	F	128	132	parallel
Strand 6	F	103	107	parallel
Strand 7	F	80	86	parallel
Strand 8	F	44	47	parallel
Strand 9	F	24	28	parallel

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There are 8 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	35	first strand
Strand 2	G	4	9	parallel
Strand 3	G	46	49	parallel
Strand 4	G	83	85	parallel
Strand 5	G	190	193	parallel
Strand 6	G	178	187	anti-parallel
Strand 7	G	167	174	anti-parallel
Strand 8	G	136	137	anti-parallel

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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	98	first strand
Strand 2	G	115	120	parallel
Strand 3	G	157	161	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	134	first strand
Strand 2	G	149	150	anti-parallel

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There are 8 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	35	first strand
Strand 2	H	4	9	parallel
Strand 3	H	46	49	parallel
Strand 4	H	83	85	parallel
Strand 5	H	190	193	parallel
Strand 6	H	178	187	anti-parallel
Strand 7	H	167	174	anti-parallel
Strand 8	H	136	137	anti-parallel

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There are 3 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	94	98	first strand
Strand 2	H	115	120	parallel
Strand 3	H	157	161	anti-parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	134	first strand
Strand 2	H	149	150	anti-parallel

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There are 8 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	30	35	first strand
Strand 2	I	4	9	parallel
Strand 3	I	46	49	parallel
Strand 4	I	83	85	parallel
Strand 5	I	190	193	parallel
Strand 6	I	178	187	anti-parallel
Strand 7	I	167	174	anti-parallel
Strand 8	I	136	137	anti-parallel

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There are 3 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	94	98	first strand
Strand 2	I	115	120	parallel
Strand 3	I	157	161	anti-parallel

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There are 2 strands in IC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	133	134	first strand
Strand 2	I	149	150	anti-parallel

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There are 8 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	30	35	first strand
Strand 2	J	4	9	parallel
Strand 3	J	46	49	parallel
Strand 4	J	83	85	parallel
Strand 5	J	190	193	parallel
Strand 6	J	178	187	anti-parallel
Strand 7	J	167	174	anti-parallel
Strand 8	J	136	137	anti-parallel

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There are 3 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	94	98	first strand
Strand 2	J	115	120	parallel
Strand 3	J	157	161	anti-parallel

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There are 2 strands in JC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	133	134	first strand
Strand 2	J	149	150	anti-parallel

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There are 8 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	30	35	first strand
Strand 2	K	4	9	parallel
Strand 3	K	46	49	parallel
Strand 4	K	83	85	parallel
Strand 5	K	190	193	parallel
Strand 6	K	178	187	anti-parallel
Strand 7	K	167	174	anti-parallel
Strand 8	K	136	137	anti-parallel

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There are 3 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	94	98	first strand
Strand 2	K	115	120	parallel
Strand 3	K	157	161	anti-parallel

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There are 2 strands in KC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	134	first strand
Strand 2	K	149	150	anti-parallel

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There are 8 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	35	first strand
Strand 2	L	4	9	parallel
Strand 3	L	46	49	parallel
Strand 4	L	83	85	parallel
Strand 5	L	190	193	parallel
Strand 6	L	178	187	anti-parallel
Strand 7	L	167	174	anti-parallel
Strand 8	L	136	137	anti-parallel

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There are 3 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	94	98	first strand
Strand 2	L	115	120	parallel
Strand 3	L	157	161	anti-parallel

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There are 2 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	133	134	first strand
Strand 2	L	149	150	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ADS

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ADS