Analysis of interatomic Contacts of Structural Units in PDB entry:
4ADW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ADW entry

There are 2 chains in PDB entry 4ADW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 488
B
 MET 1SER 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4ADW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
50 55Right-handed alpha
Helix 3
3
A
56 77Right-handed alpha
Helix 4
4
A
91 117Right-handed alpha
Helix 5
5
A
171 175Right-handed 310
Helix 6
6
A
178 182Right-handed alpha
Helix 7
7
A
197 211Right-handed alpha
Helix 8
8
A
231 246Right-handed alpha
Helix 9
9
A
296 300Right-handed 310
Helix 10
10
A
304 308Right-handed 310
Helix 11
11
A
334 350Right-handed alpha
Helix 12
12
A
378 386Right-handed alpha
Helix 13
13
A
398 403Right-handed 310
Helix 14
14
A
433 447Right-handed alpha
Helix 15
15
A
450 456Right-handed alpha
Helix 16
16
A
464 469Right-handed 310
Helix 17
17
B
13 26Right-handed alpha
Helix 18
18
B
56 77Right-handed alpha
Helix 19
19
B
91 117Right-handed alpha
Helix 20
20
B
171 175Right-handed 310
Helix 21
21
B
178 182Right-handed alpha
Helix 22
22
B
197 211Right-handed alpha
Helix 23
23
B
231 244Right-handed alpha
Helix 24
24
B
304 308Right-handed 310
Helix 25
25
B
326 330Right-handed 310
Helix 26
26
B
334 350Right-handed alpha
Helix 27
27
B
378 386Right-handed alpha
Helix 28
28
B
398 403Right-handed 310
Helix 29
29
B
433 447Right-handed alpha
Helix 30
30
B
450 456Right-handed alpha
Helix 31
31
B
464 471Right-handed 310
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There are 16 sheets in PDB entry 4ADW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF, BG,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
31 35parallel
Strand 3
A
5 10parallel
Strand 4
A
147 158parallel
Strand 5
A
322 324anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
31 35parallel
Strand 3
A
5 10parallel
Strand 4
A
147 158parallel
Strand 5
A
134 138anti-parallel
Strand 6
A
126 129anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 324first strand
Strand 2
A
147 158anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
B
89 90anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
B
81 82anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
287 289anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
280 283parallel
Strand 3
A
190 194parallel
Strand 4
A
216 220parallel
Strand 5
A
247 250parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 260first strand
Strand 2
A
266 269anti-parallel
Strand 3
A
275 278anti-parallel
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There are 7 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 366first strand
Strand 2
A
372 376anti-parallel
Strand 3
A
424 430anti-parallel
Strand 4
A
411 418anti-parallel
Strand 5
A
388 396anti-parallel
Strand 6
A
476 479anti-parallel
Strand 7
A
483 484anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
31 35parallel
Strand 3
B
5 10parallel
Strand 4
B
147 158parallel
Strand 5
B
322 324anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
31 35parallel
Strand 3
B
5 10parallel
Strand 4
B
147 158parallel
Strand 5
B
134 138anti-parallel
Strand 6
B
126 129anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 324first strand
Strand 2
B
147 158anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 164first strand
Strand 2
B
287 289anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
280 283parallel
Strand 3
B
190 194parallel
Strand 4
B
216 220parallel
Strand 5
B
247 250parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 260first strand
Strand 2
B
266 269anti-parallel
Strand 3
B
275 278anti-parallel
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There are 7 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 366first strand
Strand 2
B
372 376anti-parallel
Strand 3
B
424 430anti-parallel
Strand 4
B
411 418anti-parallel
Strand 5
B
388 396anti-parallel
Strand 6
B
476 479anti-parallel
Strand 7
B
483 484anti-parallel
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