Analysis of interatomic Contacts of Structural Units in PDB entry:
4AED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AED entry

There are 4 chains in PDB entry 4AED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2LEU 297
B
 SER 10GLN 254
C
 GLY 1GLN 242
D
 HIS 13LYS 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 4AED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
49 53Right-handed 310
Helix 3
3
A
59 63Right-handed 310
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
116 124Right-handed alpha
Helix 6
6
A
168 173Right-handed 310
Helix 7
7
A
215 219Right-handed 310
Helix 8
8
A
225 229Right-handed 310
Helix 9
9
B
56 60Right-handed 310
Helix 10
10
B
81 87Right-handed alpha
Helix 11
11
B
89 98Right-handed alpha
Helix 12
12
B
147 152Right-handed alpha
Helix 13
13
B
162 166Right-handed 310
Helix 14
14
B
171 178Right-handed 310
Helix 15
15
C
43 46Right-handed 310
Helix 16
16
C
65 69Right-handed 310
Helix 17
17
C
94 98Right-handed 310
Helix 18
18
C
99 106Right-handed alpha
Helix 19
19
C
145 150Right-handed alpha
Helix 20
20
D
35 39Right-handed 310
Helix 21
21
D
50 55Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 4AED. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, CA, CB, CC, CD, CE, CF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
D
47 48anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
247 260anti-parallel
Strand 3
A
128 140anti-parallel
Strand 4
A
188 192anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
247 260anti-parallel
Strand 3
A
128 140anti-parallel
Strand 4
A
201 202anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
128 140anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
178 182anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
21 25anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
190 195parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
232 248anti-parallel
Strand 5
B
64 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
78 80anti-parallel
Strand 3
B
212 223anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
180 184anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
211 220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 74first strand
Strand 2
C
211 220parallel
Back to list of sheets
Back to top of page

There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 169first strand
Strand 2
C
115 121anti-parallel
Strand 3
C
211 220anti-parallel
Strand 4
C
72 74parallel
Back to list of sheets
Back to top of page

There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 169first strand
Strand 2
C
115 121anti-parallel
Strand 3
C
211 220anti-parallel
Strand 4
C
51 52anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 87first strand
Strand 2
C
193 198anti-parallel
Strand 3
C
130 136anti-parallel
Strand 4
C
153 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 111first strand
Strand 2
C
178 179anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il