Analysis of interatomic Contacts of Structural Units in PDB entry:
4AEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AEE entry

There are 2 chains in PDB entry 4AEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 696
B
 MET 1ILE 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 4AEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
113 118Right-handed 310
Helix 2
2
A
212 214Right-handed 310
Helix 3
3
A
232 236Right-handed 310
Helix 4
4
A
240 244Right-handed 310
Helix 5
5
A
263 269Right-handed alpha
Helix 6
6
A
270 278Right-handed alpha
Helix 7
7
A
306 309Right-handed 310
Helix 8
8
A
310 324Right-handed alpha
Helix 9
9
A
341 351Right-handed alpha
Helix 10
10
A
356 359Right-handed 310
Helix 11
11
A
367 379Right-handed alpha
Helix 12
12
A
384 390Right-handed 310
Helix 13
13
A
391 397Right-handed alpha
Helix 14
14
A
404 407Right-handed 310
Helix 15
15
A
417 433Right-handed alpha
Helix 16
16
A
443 447Right-handed 310
Helix 17
17
A
448 463Right-handed alpha
Helix 18
18
A
475 479Right-handed 310
Helix 19
19
A
488 500Right-handed alpha
Helix 20
20
A
505 518Right-handed alpha
Helix 21
21
A
521 528Right-handed alpha
Helix 22
22
A
539 545Right-handed alpha
Helix 23
23
A
546 560Right-handed alpha
Helix 24
24
A
569 573Right-handed 310
Helix 25
25
A
589 593Right-handed 310
Helix 26
26
A
594 611Right-handed alpha
Helix 27
27
A
611 616Right-handed alpha
Helix 28
28
B
113 118Right-handed 310
Helix 29
29
B
212 214Right-handed 310
Helix 30
30
B
232 236Right-handed 310
Helix 31
31
B
240 244Right-handed 310
Helix 32
32
B
263 269Right-handed alpha
Helix 33
33
B
270 278Right-handed alpha
Helix 34
34
B
306 309Right-handed 310
Helix 35
35
B
310 324Right-handed alpha
Helix 36
36
B
341 351Right-handed alpha
Helix 37
37
B
354 359Right-handed 310
Helix 38
38
B
367 379Right-handed alpha
Helix 39
39
B
384 390Right-handed 310
Helix 40
40
B
391 397Right-handed alpha
Helix 41
41
B
404 407Right-handed 310
Helix 42
42
B
417 434Right-handed alpha
Helix 43
43
B
443 447Right-handed 310
Helix 44
44
B
448 463Right-handed alpha
Helix 45
45
B
475 479Right-handed 310
Helix 46
46
B
488 500Right-handed alpha
Helix 47
47
B
505 518Right-handed alpha
Helix 48
48
B
521 528Right-handed alpha
Helix 49
49
B
539 545Right-handed alpha
Helix 50
50
B
546 560Right-handed alpha
Helix 51
51
B
569 573Right-handed 310
Helix 52
52
B
580 584Right-handed 310
Helix 53
53
B
589 593Right-handed 310
Helix 54
54
B
594 611Right-handed alpha
Helix 55
55
B
611 616Right-handed alpha
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There are 19 sheets in PDB entry 4AEE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, BA, BB, BC, BD, BE, BF, BG, BH, BI,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 10first strand
Strand 2
A
14 25anti-parallel
Strand 3
A
55 62anti-parallel
Strand 4
A
50 52anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
65 73anti-parallel
Strand 3
A
100 108anti-parallel
Strand 4
A
88 92anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
133 141anti-parallel
Strand 3
A
167 175anti-parallel
Strand 4
A
160 164anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
148 150anti-parallel
Strand 3
A
179 188anti-parallel
Strand 4
A
191 196anti-parallel
Strand 5
A
199 201parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
148 150anti-parallel
Strand 3
A
179 188anti-parallel
Strand 4
A
207 210anti-parallel
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There are 8 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 486first strand
Strand 2
A
467 470parallel
Strand 3
A
438 441parallel
Strand 4
A
327 332parallel
Strand 5
A
281 284parallel
Strand 6
A
228 231parallel
Strand 7
A
563 567parallel
Strand 8
A
529 530parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
298 304anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 337first strand
Strand 2
A
411 412anti-parallel
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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 623first strand
Strand 2
A
628 635anti-parallel
Strand 3
A
638 645anti-parallel
Strand 4
A
686 690anti-parallel
Strand 5
A
663 664anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 652first strand
Strand 2
A
680 681anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 10first strand
Strand 2
B
14 25anti-parallel
Strand 3
B
55 62anti-parallel
Strand 4
B
48 52anti-parallel
Strand 5
B
33 37anti-parallel
Strand 6
B
65 73anti-parallel
Strand 7
B
100 108anti-parallel
Strand 8
B
88 92anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 130first strand
Strand 2
B
133 140anti-parallel
Strand 3
B
167 175anti-parallel
Strand 4
B
160 164anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 156first strand
Strand 2
B
148 151anti-parallel
Strand 3
B
179 188anti-parallel
Strand 4
B
191 196anti-parallel
Strand 5
B
199 201parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 156first strand
Strand 2
B
148 151anti-parallel
Strand 3
B
179 188anti-parallel
Strand 4
B
207 210anti-parallel
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There are 8 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
485 486first strand
Strand 2
B
467 470parallel
Strand 3
B
438 441parallel
Strand 4
B
327 332parallel
Strand 5
B
281 284parallel
Strand 6
B
228 231parallel
Strand 7
B
563 567parallel
Strand 8
B
529 530parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 290first strand
Strand 2
B
298 304anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 337first strand
Strand 2
B
411 412anti-parallel
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There are 5 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
618 623first strand
Strand 2
B
628 635anti-parallel
Strand 3
B
638 645anti-parallel
Strand 4
B
686 690anti-parallel
Strand 5
B
663 664anti-parallel
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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
651 652first strand
Strand 2
B
680 681anti-parallel
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