Analysis of interatomic Contacts of Structural Units in PDB entry:
4AEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AEF entry

There are 2 chains in PDB entry 4AEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 645
B
 MET 1TYR 645
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 4AEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
89 92Right-handed 310
Helix 2
2
A
201 207Right-handed 310
Helix 3
3
A
213 218Right-handed alpha
Helix 4
4
A
237 244Right-handed alpha
Helix 5
5
A
244 252Right-handed alpha
Helix 6
6
A
280 283Right-handed 310
Helix 7
7
A
284 298Right-handed alpha
Helix 8
8
A
315 325Right-handed alpha
Helix 9
9
A
330 333Right-handed 310
Helix 10
10
A
345 353Right-handed alpha
Helix 11
11
A
354 358Right-handed 310
Helix 12
12
A
359 367Right-handed alpha
Helix 13
13
A
386 403Right-handed alpha
Helix 14
14
A
412 416Right-handed 310
Helix 15
15
A
417 428Right-handed alpha
Helix 16
16
A
442 446Right-handed 310
Helix 17
17
A
455 466Right-handed alpha
Helix 18
18
A
472 488Right-handed alpha
Helix 19
19
A
489 494Right-handed 310
Helix 20
20
A
505 511Right-handed alpha
Helix 21
21
A
512 526Right-handed alpha
Helix 22
22
A
535 539Right-handed 310
Helix 23
23
A
558 562Right-handed 310
Helix 24
24
A
563 579Right-handed alpha
Helix 25
25
A
580 586Right-handed alpha
Helix 26
26
B
89 92Right-handed 310
Helix 27
27
B
201 205Right-handed 310
Helix 28
28
B
213 218Right-handed alpha
Helix 29
29
B
237 244Right-handed alpha
Helix 30
30
B
244 252Right-handed alpha
Helix 31
31
B
280 283Right-handed 310
Helix 32
32
B
284 298Right-handed alpha
Helix 33
33
B
315 325Right-handed alpha
Helix 34
34
B
330 333Right-handed 310
Helix 35
35
B
346 351Right-handed alpha
Helix 36
36
B
354 357Right-handed 310
Helix 37
37
B
358 367Right-handed alpha
Helix 38
38
B
386 403Right-handed alpha
Helix 39
39
B
412 416Right-handed 310
Helix 40
40
B
417 428Right-handed alpha
Helix 41
41
B
442 446Right-handed 310
Helix 42
42
B
455 466Right-handed alpha
Helix 43
43
B
472 488Right-handed alpha
Helix 44
44
B
489 494Right-handed 310
Helix 45
45
B
505 511Right-handed alpha
Helix 46
46
B
512 526Right-handed alpha
Helix 47
47
B
535 539Right-handed 310
Helix 48
48
B
558 562Right-handed 310
Helix 49
49
B
563 579Right-handed alpha
Helix 50
50
B
580 586Right-handed alpha
Back to top of page

There are 27 sheets in PDB entry 4AEF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 10first strand
Strand 2
A
14 24anti-parallel
Strand 3
A
52 59anti-parallel
Strand 4
A
45 48anti-parallel
Strand 5
A
30 34anti-parallel
Strand 6
A
62 70anti-parallel
Strand 7
A
73 75parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 10first strand
Strand 2
A
14 24anti-parallel
Strand 3
A
52 59anti-parallel
Strand 4
A
45 48anti-parallel
Strand 5
A
30 34anti-parallel
Strand 6
A
62 70anti-parallel
Strand 7
A
93 102anti-parallel
Strand 8
A
83 88anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
62 70parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
124 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
124 132anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
158 166anti-parallel
Strand 3
A
124 132anti-parallel
Strand 4
A
118 121anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
158 166anti-parallel
Strand 3
A
124 132anti-parallel
Strand 4
A
109 110anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
136 142anti-parallel
Strand 3
A
172 180anti-parallel
Strand 4
A
185 193anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 453first strand
Strand 2
A
433 436parallel
Strand 3
A
407 410parallel
Strand 4
A
301 306parallel
Strand 5
A
255 258parallel
Strand 6
A
209 212parallel
Strand 7
A
531 533parallel
Back to list of sheets
Back to top of page

There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
272 278anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
376 380anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 545first strand
Strand 2
A
548 550anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 594first strand
Strand 2
A
597 604anti-parallel
Strand 3
A
607 614anti-parallel
Strand 4
A
631 636anti-parallel
Strand 5
A
639 643anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 622first strand
Strand 2
A
625 627anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 10first strand
Strand 2
B
14 24anti-parallel
Strand 3
B
52 59anti-parallel
Strand 4
B
45 48anti-parallel
Strand 5
B
30 34anti-parallel
Strand 6
B
62 70anti-parallel
Strand 7
B
73 75parallel
Back to list of sheets
Back to top of page

There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 10first strand
Strand 2
B
14 24anti-parallel
Strand 3
B
52 59anti-parallel
Strand 4
B
45 48anti-parallel
Strand 5
B
30 34anti-parallel
Strand 6
B
62 70anti-parallel
Strand 7
B
93 102anti-parallel
Strand 8
B
83 88anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
62 70parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 110first strand
Strand 2
B
124 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 121first strand
Strand 2
B
124 132anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 154first strand
Strand 2
B
158 166anti-parallel
Strand 3
B
124 132anti-parallel
Strand 4
B
118 121anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 154first strand
Strand 2
B
158 166anti-parallel
Strand 3
B
124 132anti-parallel
Strand 4
B
109 110anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
B
136 142anti-parallel
Strand 3
B
172 180anti-parallel
Strand 4
B
185 193anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 453first strand
Strand 2
B
433 436parallel
Strand 3
B
407 410parallel
Strand 4
B
301 306parallel
Strand 5
B
255 258parallel
Strand 6
B
209 212parallel
Strand 7
B
531 533parallel
Back to list of sheets
Back to top of page

There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
272 278anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
543 545first strand
Strand 2
B
548 550anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 594first strand
Strand 2
B
597 604anti-parallel
Strand 3
B
607 614anti-parallel
Strand 4
B
631 636anti-parallel
Strand 5
B
639 643anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
620 622first strand
Strand 2
B
625 627anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il