Analysis of interatomic Contacts of Structural Units in PDB entry:
4AEX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AEX entry

There are 2 chains in PDB entry 4AEX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1SER 563
B
 SER 1VAL 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 4AEX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 29Right-handed alpha
Helix 2
2
A
33 35Right-handed 310
Helix 3
3
A
41 43Right-handed 310
Helix 4
4
A
44 53Right-handed alpha
Helix 5
5
A
61 76Right-handed alpha
Helix 6
6
A
84 91Right-handed alpha
Helix 7
7
A
104 110Right-handed alpha
Helix 8
8
A
112 129Right-handed alpha
Helix 9
9
A
148 152Right-handed 310
Helix 10
10
A
164 188Right-handed alpha
Helix 11
11
A
192 195Right-handed 310
Helix 12
12
A
196 210Right-handed alpha
Helix 13
13
A
223 228Right-handed alpha
Helix 14
14
A
229 241Right-handed alpha
Helix 15
15
A
246 260Right-handed alpha
Helix 16
16
A
286 307Right-handed alpha
Helix 17
17
A
328 346Right-handed alpha
Helix 18
18
A
359 363Right-handed 310
Helix 19
19
A
376 378Right-handed 310
Helix 20
20
A
388 401Right-handed alpha
Helix 21
21
A
407 415Right-handed alpha
Helix 22
22
A
418 424Right-handed alpha
Helix 23
23
A
424 437Right-handed alpha
Helix 24
24
A
455 457Right-handed 310
Helix 25
25
A
458 468Right-handed alpha
Helix 26
26
A
469 473Right-handed 310
Helix 27
27
A
478 493Right-handed alpha
Helix 28
28
A
496 514Right-handed alpha
Helix 29
29
A
515 526Right-handed alpha
Helix 30
30
A
527 530Right-handed 310
Helix 31
31
A
539 544Right-handed alpha
Helix 32
32
A
555 559Right-handed 310
Helix 33
33
B
24 29Right-handed alpha
Helix 34
34
B
33 35Right-handed 310
Helix 35
35
B
41 43Right-handed 310
Helix 36
36
B
44 52Right-handed alpha
Helix 37
37
B
61 76Right-handed alpha
Helix 38
38
B
84 91Right-handed alpha
Helix 39
39
B
104 110Right-handed alpha
Helix 40
40
B
112 129Right-handed alpha
Helix 41
41
B
148 152Right-handed 310
Helix 42
42
B
164 180Right-handed alpha
Helix 43
43
B
181 188Right-handed alpha
Helix 44
44
B
192 195Right-handed 310
Helix 45
45
B
196 210Right-handed alpha
Helix 46
46
B
223 228Right-handed alpha
Helix 47
47
B
229 242Right-handed alpha
Helix 48
48
B
246 260Right-handed alpha
Helix 49
49
B
286 307Right-handed alpha
Helix 50
50
B
328 346Right-handed alpha
Helix 51
51
B
359 363Right-handed 310
Helix 52
52
B
376 378Right-handed 310
Helix 53
53
B
388 401Right-handed alpha
Helix 54
54
B
407 415Right-handed alpha
Helix 55
55
B
418 424Right-handed alpha
Helix 56
56
B
424 437Right-handed alpha
Helix 57
57
B
455 457Right-handed 310
Helix 58
58
B
458 468Right-handed alpha
Helix 59
59
B
469 473Right-handed 310
Helix 60
60
B
478 493Right-handed alpha
Helix 61
61
B
496 514Right-handed alpha
Helix 62
62
B
515 526Right-handed alpha
Helix 63
63
B
527 530Right-handed 310
Helix 64
64
B
539 544Right-handed alpha
Helix 65
65
B
555 559Right-handed 310
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There are 10 sheets in PDB entry 4AEX. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
273 277anti-parallel
Strand 3
A
264 267anti-parallel
Strand 4
A
136 140parallel
Strand 5
A
159 162anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
144 146anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
319 325anti-parallel
Strand 3
A
312 316anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 374first strand
Strand 2
A
380 385anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 447first strand
Strand 2
A
450 454anti-parallel
Strand 3
A
561 562parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
273 277anti-parallel
Strand 3
B
264 267anti-parallel
Strand 4
B
136 140parallel
Strand 5
B
159 162anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
144 146anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 219first strand
Strand 2
B
319 325anti-parallel
Strand 3
B
312 316anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 374first strand
Strand 2
B
380 385anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 447first strand
Strand 2
B
450 454anti-parallel
Strand 3
B
561 563parallel
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