Analysis of interatomic Contacts of Structural Units in PDB entry:
4AG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AG5 entry

There are 4 chains in PDB entry 4AG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 205TYR 588
B
 SER 205GLN 587
C
 SER 238LEU 532
D
 TRP 229THR 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 4AG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
249 263Right-handed alpha
Helix 2
2
A
277 284Right-handed alpha
Helix 3
3
A
293 297Right-handed 310
Helix 4
4
A
320 337Right-handed alpha
Helix 5
5
A
341 359Right-handed alpha
Helix 6
6
A
366 370Right-handed 310
Helix 7
7
A
371 375Right-handed 310
Helix 8
8
A
377 390Right-handed alpha
Helix 9
9
A
396 408Right-handed alpha
Helix 10
10
A
411 416Right-handed alpha
Helix 11
11
A
433 436Right-handed 310
Helix 12
12
A
439 461Right-handed alpha
Helix 13
13
A
473 477Right-handed 310
Helix 14
14
A
482 495Right-handed alpha
Helix 15
15
A
508 514Right-handed 310
Helix 16
16
A
517 527Right-handed alpha
Helix 17
17
A
537 548Right-handed alpha
Helix 18
18
A
551 560Right-handed alpha
Helix 19
19
B
249 264Right-handed alpha
Helix 20
20
B
277 285Right-handed alpha
Helix 21
21
B
320 337Right-handed alpha
Helix 22
22
B
341 359Right-handed alpha
Helix 23
23
B
366 370Right-handed 310
Helix 24
24
B
371 375Right-handed 310
Helix 25
25
B
377 389Right-handed alpha
Helix 26
26
B
392 409Right-handed alpha
Helix 27
27
B
411 416Right-handed alpha
Helix 28
28
B
433 436Right-handed 310
Helix 29
29
B
439 461Right-handed alpha
Helix 30
30
B
473 477Right-handed 310
Helix 31
31
B
482 498Right-handed alpha
Helix 32
32
B
508 513Right-handed 310
Helix 33
33
B
517 527Right-handed alpha
Helix 34
34
B
537 548Right-handed alpha
Helix 35
35
B
551 560Right-handed alpha
Helix 36
36
C
250 262Right-handed alpha
Helix 37
37
C
277 285Right-handed alpha
Helix 38
38
C
293 297Right-handed 310
Helix 39
39
C
320 337Right-handed alpha
Helix 40
40
C
341 359Right-handed alpha
Helix 41
41
C
366 370Right-handed 310
Helix 42
42
C
371 375Right-handed 310
Helix 43
43
C
377 392Right-handed alpha
Helix 44
44
C
392 408Right-handed alpha
Helix 45
45
C
411 416Right-handed alpha
Helix 46
46
C
433 437Right-handed 310
Helix 47
47
C
439 461Right-handed alpha
Helix 48
48
C
472 477Right-handed 310
Helix 49
49
C
482 497Right-handed alpha
Helix 50
50
C
517 527Right-handed alpha
Helix 51
51
D
249 263Right-handed alpha
Helix 52
52
D
277 284Right-handed alpha
Helix 53
53
D
320 337Right-handed alpha
Helix 54
54
D
341 359Right-handed alpha
Helix 55
55
D
366 370Right-handed 310
Helix 56
56
D
377 392Right-handed alpha
Helix 57
57
D
392 408Right-handed alpha
Helix 58
58
D
411 416Right-handed alpha
Helix 59
59
D
433 436Right-handed 310
Helix 60
60
D
439 461Right-handed alpha
Helix 61
61
D
473 477Right-handed 310
Helix 62
62
D
482 498Right-handed alpha
Helix 63
63
D
517 525Right-handed alpha
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There are 5 sheets in PDB entry 4AG5. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA, A,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 217first strand
Strand 2
A
223 226anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
427 431parallel
Strand 3
A
268 272parallel
Strand 4
A
467 471parallel
Strand 5
A
501 506parallel
Strand 6
A
240 243parallel
Strand 7
A
530 533parallel
Strand 8
A
565 570anti-parallel
Strand 9
A
573 578anti-parallel
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There are 11 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 226first strand
Strand 2
B
213 217anti-parallel
Strand 3
B
573 579anti-parallel
Strand 4
B
565 570anti-parallel
Strand 5
B
530 533anti-parallel
Strand 6
B
240 243parallel
Strand 7
B
501 506parallel
Strand 8
B
466 471parallel
Strand 9
B
267 272parallel
Strand 10
B
427 431parallel
Strand 11
B
287 290parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
287 290first strand
Strand 2
C
427 431parallel
Strand 3
C
267 272parallel
Strand 4
C
466 470parallel
Strand 5
C
501 503parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
240 243first strand
Strand 2
D
501 506parallel
Strand 3
D
467 471parallel
Strand 4
D
270 272parallel
Strand 5
D
430 431parallel
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