Analysis of interatomic Contacts of Structural Units in PDB entry:
4AG6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AG6 entry

There are 4 chains in PDB entry 4AG6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 205TYR 588
B
 ALA 204GLN 587
C
 SER 238ASN 549
D
 GLY 249SER 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 4AG6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
249 263Right-handed alpha
Helix 2
2
A
277 284Right-handed alpha
Helix 3
3
A
293 297Right-handed 310
Helix 4
4
A
320 337Right-handed alpha
Helix 5
5
A
341 359Right-handed alpha
Helix 6
6
A
366 370Right-handed 310
Helix 7
7
A
371 375Right-handed 310
Helix 8
8
A
377 389Right-handed alpha
Helix 9
9
A
392 408Right-handed alpha
Helix 10
10
A
411 416Right-handed alpha
Helix 11
11
A
433 436Right-handed 310
Helix 12
12
A
439 461Right-handed alpha
Helix 13
13
A
472 477Right-handed 310
Helix 14
14
A
482 495Right-handed alpha
Helix 15
15
A
496 499Right-handed 310
Helix 16
16
A
508 514Right-handed 310
Helix 17
17
A
517 527Right-handed alpha
Helix 18
18
A
537 548Right-handed alpha
Helix 19
19
A
551 560Right-handed alpha
Helix 20
20
A
582 586Right-handed 310
Helix 21
21
B
249 263Right-handed alpha
Helix 22
22
B
277 284Right-handed alpha
Helix 23
23
B
293 297Right-handed 310
Helix 24
24
B
320 337Right-handed alpha
Helix 25
25
B
341 359Right-handed alpha
Helix 26
26
B
366 370Right-handed 310
Helix 27
27
B
371 375Right-handed 310
Helix 28
28
B
377 392Right-handed alpha
Helix 29
29
B
392 408Right-handed alpha
Helix 30
30
B
411 416Right-handed alpha
Helix 31
31
B
433 436Right-handed 310
Helix 32
32
B
439 461Right-handed alpha
Helix 33
33
B
472 477Right-handed 310
Helix 34
34
B
482 495Right-handed alpha
Helix 35
35
B
508 514Right-handed 310
Helix 36
36
B
517 527Right-handed alpha
Helix 37
37
B
537 548Right-handed alpha
Helix 38
38
B
551 561Right-handed alpha
Helix 39
39
B
582 587Right-handed 310
Helix 40
40
C
250 263Right-handed alpha
Helix 41
41
C
277 282Right-handed alpha
Helix 42
42
C
293 297Right-handed 310
Helix 43
43
C
320 338Right-handed alpha
Helix 44
44
C
341 359Right-handed alpha
Helix 45
45
C
366 370Right-handed 310
Helix 46
46
C
371 375Right-handed 310
Helix 47
47
C
377 389Right-handed alpha
Helix 48
48
C
392 409Right-handed alpha
Helix 49
49
C
411 415Right-handed 310
Helix 50
50
C
439 460Right-handed alpha
Helix 51
51
C
473 477Right-handed 310
Helix 52
52
C
482 496Right-handed alpha
Helix 53
53
C
497 499Right-handed 310
Helix 54
54
C
516 520Right-handed 310
Helix 55
55
C
543 548Right-handed alpha
Helix 56
56
D
249 263Right-handed alpha
Helix 57
57
D
320 337Right-handed alpha
Helix 58
58
D
341 360Right-handed alpha
Helix 59
59
D
377 389Right-handed alpha
Helix 60
60
D
392 408Right-handed alpha
Helix 61
61
D
411 416Right-handed alpha
Helix 62
62
D
432 436Right-handed 310
Helix 63
63
D
441 460Right-handed alpha
Helix 64
64
D
482 492Right-handed alpha
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There are 5 sheets in PDB entry 4AG6. Click on sheet of interest to get list of strands forming it: AA, BA, CA, CB, A,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
213 217anti-parallel
Strand 3
A
573 579anti-parallel
Strand 4
A
565 570anti-parallel
Strand 5
A
530 533anti-parallel
Strand 6
A
240 243parallel
Strand 7
A
501 506parallel
Strand 8
A
467 470parallel
Strand 9
A
268 272parallel
Strand 10
A
427 431parallel
Strand 11
A
287 290parallel
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There are 11 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 226first strand
Strand 2
B
213 217anti-parallel
Strand 3
B
573 579anti-parallel
Strand 4
B
565 570anti-parallel
Strand 5
B
530 533anti-parallel
Strand 6
B
240 243parallel
Strand 7
B
501 506parallel
Strand 8
B
467 470parallel
Strand 9
B
268 272parallel
Strand 10
B
427 431parallel
Strand 11
B
287 290parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 241first strand
Strand 2
C
502 505parallel
Strand 3
C
468 471parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 272first strand
Strand 2
C
429 431parallel
Strand 3
C
288 290parallel
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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
270 271first strand
Strand 2
D
468 470parallel
Strand 3
D
502 504parallel
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