Analysis of interatomic Contacts of Structural Units in PDB entry:
4AGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AGS entry

There are 3 chains in PDB entry 4AGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 4GLN 448
B
 ALA 5GLN 444
C
 ALA 3PHE 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 4AGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
38 42Right-handed 310
Helix 3
3
A
43 50Right-handed alpha
Helix 4
4
A
70 81Right-handed alpha
Helix 5
5
A
86 90Right-handed 310
Helix 6
6
A
92 118Right-handed alpha
Helix 7
7
A
122 144Right-handed alpha
Helix 8
8
A
156 178Right-handed alpha
Helix 9
9
A
185 196Right-handed alpha
Helix 10
10
A
198 203Right-handed alpha
Helix 11
11
A
207 216Right-handed alpha
Helix 12
12
A
217 219Right-handed 310
Helix 13
13
A
225 229Right-handed 310
Helix 14
14
A
240 253Right-handed alpha
Helix 15
15
A
270 275Right-handed alpha
Helix 16
16
A
293 305Right-handed alpha
Helix 17
17
A
316 344Right-handed alpha
Helix 18
18
A
345 364Right-handed alpha
Helix 19
19
A
380 397Right-handed alpha
Helix 20
20
A
405 409Right-handed 310
Helix 21
21
A
410 422Right-handed alpha
Helix 22
22
A
423 430Right-handed alpha
Helix 23
23
A
432 448Right-handed alpha
Helix 24
24
B
14 28Right-handed alpha
Helix 25
25
B
38 42Right-handed 310
Helix 26
26
B
43 50Right-handed alpha
Helix 27
27
B
70 80Right-handed alpha
Helix 28
28
B
86 90Right-handed 310
Helix 29
29
B
92 119Right-handed alpha
Helix 30
30
B
122 144Right-handed alpha
Helix 31
31
B
156 178Right-handed alpha
Helix 32
32
B
185 196Right-handed alpha
Helix 33
33
B
198 203Right-handed alpha
Helix 34
34
B
207 216Right-handed alpha
Helix 35
35
B
217 219Right-handed 310
Helix 36
36
B
225 229Right-handed 310
Helix 37
37
B
240 253Right-handed alpha
Helix 38
38
B
270 275Right-handed alpha
Helix 39
39
B
293 305Right-handed alpha
Helix 40
40
B
316 343Right-handed alpha
Helix 41
41
B
345 364Right-handed alpha
Helix 42
42
B
380 397Right-handed alpha
Helix 43
43
B
405 409Right-handed 310
Helix 44
44
B
410 422Right-handed alpha
Helix 45
45
B
423 430Right-handed alpha
Helix 46
46
B
432 444Right-handed alpha
Helix 47
47
C
14 28Right-handed alpha
Helix 48
48
C
38 42Right-handed 310
Helix 49
49
C
43 50Right-handed alpha
Helix 50
50
C
70 80Right-handed alpha
Helix 51
51
C
86 90Right-handed 310
Helix 52
52
C
92 119Right-handed alpha
Helix 53
53
C
122 144Right-handed alpha
Helix 54
54
C
156 178Right-handed alpha
Helix 55
55
C
185 196Right-handed alpha
Helix 56
56
C
198 203Right-handed alpha
Helix 57
57
C
207 215Right-handed alpha
Helix 58
58
C
216 219Right-handed 310
Helix 59
59
C
225 229Right-handed 310
Helix 60
60
C
240 253Right-handed alpha
Helix 61
61
C
270 275Right-handed alpha
Helix 62
62
C
293 305Right-handed alpha
Helix 63
63
C
316 344Right-handed alpha
Helix 64
64
C
345 365Right-handed alpha
Helix 65
65
C
380 397Right-handed alpha
Helix 66
66
C
405 409Right-handed 310
Helix 67
67
C
410 423Right-handed alpha
Helix 68
68
C
423 430Right-handed alpha
Helix 69
69
C
432 448Right-handed alpha
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There are 6 sheets in PDB entry 4AGS. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
6 10parallel
Strand 3
A
57 60anti-parallel
Strand 4
A
66 69anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
233 236parallel
Strand 3
A
282 284anti-parallel
Strand 4
A
290 292anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
6 10parallel
Strand 3
B
57 60anti-parallel
Strand 4
B
66 69anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 261first strand
Strand 2
B
233 236parallel
Strand 3
B
282 284anti-parallel
Strand 4
B
290 292anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
6 10parallel
Strand 3
C
57 60anti-parallel
Strand 4
C
66 69anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
258 261first strand
Strand 2
C
233 236parallel
Strand 3
C
282 284anti-parallel
Strand 4
C
290 292anti-parallel
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