Analysis of interatomic Contacts of Structural Units in PDB entry:
4AGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AGV entry

There are 4 chains in PDB entry 4AGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3TYR 146
B
 PRO 3TYR 146
C
 PRO 3TYR 146
D
 PRO 3TYR 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 4AGV. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
81 84Right-handed 310
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There are 4 sheets in PDB entry 4AGV. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 62first strand
Strand 2
A
40 50anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
121 129anti-parallel
Strand 5
A
4 12anti-parallel
Strand 6
C
4 12anti-parallel
Strand 7
C
121 129anti-parallel
Strand 8
C
27 34anti-parallel
Strand 9
C
40 49anti-parallel
Strand 10
C
54 62anti-parallel
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There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 112first strand
Strand 2
A
98 103anti-parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
16 22anti-parallel
Strand 5
A
138 145anti-parallel
Strand 6
C
138 145anti-parallel
Strand 7
C
16 22anti-parallel
Strand 8
C
87 94anti-parallel
Strand 9
C
98 103anti-parallel
Strand 10
C
106 112anti-parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 62first strand
Strand 2
B
40 50anti-parallel
Strand 3
B
27 34anti-parallel
Strand 4
B
121 129anti-parallel
Strand 5
B
4 12anti-parallel
Strand 6
D
4 12anti-parallel
Strand 7
D
121 129anti-parallel
Strand 8
D
27 34anti-parallel
Strand 9
D
40 50anti-parallel
Strand 10
D
53 62anti-parallel
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There are 10 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 112first strand
Strand 2
B
98 103anti-parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
16 22anti-parallel
Strand 5
B
138 145anti-parallel
Strand 6
D
138 145anti-parallel
Strand 7
D
16 22anti-parallel
Strand 8
D
87 94anti-parallel
Strand 9
D
98 103anti-parallel
Strand 10
D
106 112anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il