Analysis of interatomic Contacts of Structural Units in PDB entry:
4AJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AJT entry

There is 1 chain in PDB entry 4AJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 47THR 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4AJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 55Right-handed alpha
Helix 2
2
A
55 77Right-handed alpha
Helix 3
3
A
84 99Right-handed alpha
Helix 4
4
A
101 112Right-handed alpha
Helix 5
5
A
113 118Right-handed alpha
Helix 6
6
A
122 137Right-handed alpha
Helix 7
7
A
158 169Right-handed alpha
Helix 8
8
A
180 196Right-handed alpha
Helix 9
9
A
230 234Right-handed 310
Helix 10
10
A
291 296Right-handed alpha
Helix 11
11
A
300 310Right-handed alpha
Helix 12
12
A
331 338Right-handed alpha
Helix 13
13
A
341 345Right-handed 310
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There are 3 sheets in PDB entry 4AJT. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
414 421anti-parallel
Strand 3
A
403 409anti-parallel
Strand 4
A
279 286anti-parallel
Strand 5
A
268 275anti-parallel
Strand 6
A
246 263anti-parallel
Strand 7
A
312 321parallel
Strand 8
A
396 398anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
414 421anti-parallel
Strand 3
A
403 409anti-parallel
Strand 4
A
279 286anti-parallel
Strand 5
A
268 275anti-parallel
Strand 6
A
246 263anti-parallel
Strand 7
A
235 240anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
143 152parallel
Strand 3
A
213 221anti-parallel
Strand 4
A
364 373parallel
Strand 5
A
323 330anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il