Analysis of interatomic Contacts of Structural Units in PDB entry:
4AJW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4AJW entry

There are 2 chains in PDB entry 4AJW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 110	SER 1026
B	LYS 111	SER 1026

There are 69 helices in PDB entry 4AJW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	111	122	Right-handed alpha
Helix 2	2	A	125	131	Right-handed alpha
Helix 3	3	A	133	156	Right-handed alpha
Helix 4	4	A	158	167	Right-handed alpha
Helix 5	5	A	212	227	Right-handed alpha
Helix 6	6	A	235	237	Right-handed 310
Helix 7	7	A	255	258	Right-handed 310
Helix 8	8	A	259	269	Right-handed alpha
Helix 9	9	A	279	289	Right-handed alpha
Helix 10	10	A	487	492	Right-handed alpha
Helix 11	11	A	526	534	Right-handed alpha
Helix 12	12	A	534	542	Right-handed alpha
Helix 13	13	A	545	553	Right-handed alpha
Helix 14	14	A	557	570	Right-handed alpha
Helix 15	15	A	575	583	Right-handed alpha
Helix 16	16	A	589	601	Right-handed alpha
Helix 17	17	A	604	622	Right-handed alpha
Helix 18	18	A	627	638	Right-handed alpha
Helix 19	19	A	640	653	Right-handed alpha
Helix 20	20	A	660	675	Right-handed alpha
Helix 21	21	A	675	706	Right-handed alpha
Helix 22	22	A	707	720	Right-handed alpha
Helix 23	23	A	721	728	Right-handed alpha
Helix 24	24	A	784	804	Right-handed alpha
Helix 25	25	A	834	839	Right-handed alpha
Helix 26	26	A	850	863	Right-handed alpha
Helix 27	27	A	864	866	Right-handed 310
Helix 28	28	A	867	889	Right-handed alpha
Helix 29	29	A	935	943	Right-handed alpha
Helix 30	30	A	949	970	Right-handed alpha
Helix 31	31	A	970	981	Right-handed alpha
Helix 32	32	A	982	985	Right-handed 310
Helix 33	33	A	991	1002	Right-handed alpha
Helix 34	34	A	1007	1026	Right-handed alpha
Helix 35	35	B	112	122	Right-handed alpha
Helix 36	36	B	125	131	Right-handed alpha
Helix 37	37	B	133	156	Right-handed alpha
Helix 38	38	B	158	167	Right-handed alpha
Helix 39	39	B	212	227	Right-handed alpha
Helix 40	40	B	235	237	Right-handed 310
Helix 41	41	B	255	258	Right-handed 310
Helix 42	42	B	259	269	Right-handed alpha
Helix 43	43	B	279	289	Right-handed alpha
Helix 44	44	B	487	492	Right-handed alpha
Helix 45	45	B	526	534	Right-handed alpha
Helix 46	46	B	534	542	Right-handed alpha
Helix 47	47	B	545	553	Right-handed alpha
Helix 48	48	B	557	570	Right-handed alpha
Helix 49	49	B	575	583	Right-handed alpha
Helix 50	50	B	589	601	Right-handed alpha
Helix 51	51	B	604	622	Right-handed alpha
Helix 52	52	B	627	638	Right-handed alpha
Helix 53	53	B	640	653	Right-handed alpha
Helix 54	54	B	660	675	Right-handed alpha
Helix 55	55	B	675	706	Right-handed alpha
Helix 56	56	B	707	720	Right-handed alpha
Helix 57	57	B	721	728	Right-handed alpha
Helix 58	58	B	746	749	Right-handed 310
Helix 59	59	B	784	804	Right-handed alpha
Helix 60	60	B	834	839	Right-handed alpha
Helix 61	61	B	850	863	Right-handed alpha
Helix 62	62	B	864	866	Right-handed 310
Helix 63	63	B	867	889	Right-handed alpha
Helix 64	64	B	935	943	Right-handed alpha
Helix 65	65	B	949	970	Right-handed alpha
Helix 66	66	B	970	981	Right-handed alpha
Helix 67	67	B	982	985	Right-handed 310
Helix 68	68	B	991	1002	Right-handed alpha
Helix 69	69	B	1007	1026	Right-handed alpha

There are 21 sheets in PDB entry 4AJW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	208	first strand
Strand 2	A	189	196	anti-parallel
Strand 3	A	273	278	parallel
Strand 4	A	239	243	anti-parallel
Strand 5	A	249	250	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	331	first strand
Strand 2	A	470	474	anti-parallel
Strand 3	A	436	440	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	389	395	anti-parallel
Strand 3	A	417	424	anti-parallel
Strand 4	A	442	443	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	731	732	first strand
Strand 2	A	740	741	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	744	first strand
Strand 2	A	759	764	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	751	first strand
Strand 2	A	759	764	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	815	817	first strand
Strand 2	A	822	826	anti-parallel
Strand 3	A	775	780	anti-parallel
Strand 4	A	759	764	anti-parallel
Strand 5	A	750	751	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	815	817	first strand
Strand 2	A	822	826	anti-parallel
Strand 3	A	775	780	anti-parallel
Strand 4	A	759	764	anti-parallel
Strand 5	A	743	744	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	831	833	first strand
Strand 2	A	899	902	anti-parallel
Strand 3	A	907	909	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	208	first strand
Strand 2	B	189	196	anti-parallel
Strand 3	B	273	278	parallel
Strand 4	B	239	243	anti-parallel
Strand 5	B	249	250	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	380	first strand
Strand 2	B	322	331	anti-parallel
Strand 3	B	470	474	anti-parallel
Strand 4	B	436	440	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	359	first strand
Strand 2	B	340	348	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	340	348	anti-parallel

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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	443	first strand
Strand 2	B	417	424	anti-parallel
Strand 3	B	389	395	anti-parallel
Strand 4	B	340	348	anti-parallel
Strand 5	B	358	359	anti-parallel

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There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	443	first strand
Strand 2	B	417	424	anti-parallel
Strand 3	B	389	395	anti-parallel
Strand 4	B	340	348	anti-parallel
Strand 5	B	363	364	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	731	732	first strand
Strand 2	B	740	741	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	743	744	first strand
Strand 2	B	759	765	anti-parallel

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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	750	751	first strand
Strand 2	B	759	765	anti-parallel

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There are 5 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	815	819	first strand
Strand 2	B	822	826	anti-parallel
Strand 3	B	769	780	anti-parallel
Strand 4	B	759	765	anti-parallel
Strand 5	B	750	751	anti-parallel

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There are 5 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	815	819	first strand
Strand 2	B	822	826	anti-parallel
Strand 3	B	769	780	anti-parallel
Strand 4	B	759	765	anti-parallel
Strand 5	B	743	744	anti-parallel

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There are 3 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	831	833	first strand
Strand 2	B	899	902	anti-parallel
Strand 3	B	907	909	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4AJW

Analysis of interatomic Contacts of Structural Units in PDB entry:
4AJW