Analysis of interatomic Contacts of Structural Units in PDB entry:
4AKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AKV entry

There are 2 chains in PDB entry 4AKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 211ASN 573
B
 TYR 207ASN 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4AKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
266 281Right-handed alpha
Helix 2
2
A
304 319Right-handed alpha
Helix 3
3
A
322 325Right-handed 310
Helix 4
4
A
326 334Right-handed alpha
Helix 5
5
A
338 350Right-handed alpha
Helix 6
6
A
354 361Right-handed 310
Helix 7
7
A
370 408Right-handed alpha
Helix 8
8
A
408 428Right-handed alpha
Helix 9
9
A
431 435Right-handed 310
Helix 10
10
A
436 460Right-handed alpha
Helix 11
11
A
461 463Right-handed 310
Helix 12
12
A
464 505Right-handed alpha
Helix 13
13
A
509 569Right-handed alpha
Helix 14
14
A
570 572Right-handed 310
Helix 15
15
B
266 281Right-handed alpha
Helix 16
16
B
301 319Right-handed alpha
Helix 17
17
B
322 325Right-handed 310
Helix 18
18
B
326 335Right-handed alpha
Helix 19
19
B
337 348Right-handed alpha
Helix 20
20
B
370 408Right-handed alpha
Helix 21
21
B
408 428Right-handed alpha
Helix 22
22
B
431 435Right-handed 310
Helix 23
23
B
436 459Right-handed alpha
Helix 24
24
B
464 506Right-handed alpha
Helix 25
25
B
509 569Right-handed alpha
Helix 26
26
B
570 572Right-handed 310
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There are 4 sheets in PDB entry 4AKV. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
222 223anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
252 256anti-parallel
Strand 3
A
263 265anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 223first strand
Strand 2
B
213 215anti-parallel
Strand 3
B
359 360parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 235first strand
Strand 2
B
252 256anti-parallel
Strand 3
B
263 265anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il