Analysis of interatomic Contacts of Structural Units in PDB entry:
4ALJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ALJ entry

There are 5 chains in PDB entry 4ALJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3LYS 256
B
 VAL 2LYS 256
C
 VAL 2LYS 256
D
 ASN 3LYS 256
E
 VAL 2GLY 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are119 helices in PDB entry 4ALJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
41 52Right-handed alpha
Helix 3
3
A
53 55Right-handed 310
Helix 4
4
A
69 85Right-handed alpha
Helix 5
5
A
98 102Right-handed 310
Helix 6
6
A
105 109Right-handed 310
Helix 7
7
A
110 122Right-handed alpha
Helix 8
8
A
122 133Right-handed alpha
Helix 9
9
A
134 136Right-handed 310
Helix 10
10
A
147 151Right-handed 310
Helix 11
11
A
157 179Right-handed alpha
Helix 12
12
A
196 201Right-handed 310
Helix 13
13
A
203 215Right-handed alpha
Helix 14
14
A
222 235Right-handed alpha
Helix 15
15
A
236 239Right-handed 310
Helix 16
16
A
251 254Right-handed 310
Helix 17
17
B
19 31Right-handed alpha
Helix 18
18
B
41 52Right-handed alpha
Helix 19
19
B
53 55Right-handed 310
Helix 20
20
B
69 85Right-handed alpha
Helix 21
21
B
98 103Right-handed alpha
Helix 22
22
B
105 109Right-handed 310
Helix 23
23
B
110 122Right-handed alpha
Helix 24
24
B
122 134Right-handed alpha
Helix 25
25
B
147 151Right-handed 310
Helix 26
26
B
157 179Right-handed alpha
Helix 27
27
B
196 201Right-handed 310
Helix 28
28
B
203 215Right-handed alpha
Helix 29
29
B
222 234Right-handed alpha
Helix 30
30
B
235 239Right-handed 310
Helix 31
31
B
251 254Right-handed 310
Helix 32
32
C
19 31Right-handed alpha
Helix 33
33
C
41 52Right-handed alpha
Helix 34
34
C
53 55Right-handed 310
Helix 35
35
C
69 85Right-handed alpha
Helix 36
36
C
98 103Right-handed 310
Helix 37
37
C
105 109Right-handed 310
Helix 38
38
C
110 122Right-handed alpha
Helix 39
39
C
122 134Right-handed alpha
Helix 40
40
C
147 151Right-handed 310
Helix 41
41
C
158 179Right-handed alpha
Helix 42
42
C
196 201Right-handed 310
Helix 43
43
C
203 215Right-handed alpha
Helix 44
44
C
222 235Right-handed alpha
Helix 45
45
C
236 239Right-handed 310
Helix 46
46
C
251 254Right-handed 310
Helix 47
47
D
19 31Right-handed alpha
Helix 48
48
D
41 52Right-handed alpha
Helix 49
49
D
53 55Right-handed 310
Helix 50
50
D
69 85Right-handed alpha
Helix 51
51
D
98 102Right-handed 310
Helix 52
52
D
105 109Right-handed 310
Helix 53
53
D
110 122Right-handed alpha
Helix 54
54
D
122 134Right-handed alpha
Helix 55
55
D
147 151Right-handed 310
Helix 56
56
D
157 179Right-handed alpha
Helix 57
57
D
196 201Right-handed 310
Helix 58
58
D
203 215Right-handed alpha
Helix 59
59
D
222 235Right-handed alpha
Helix 60
60
D
236 239Right-handed 310
Helix 61
61
D
251 254Right-handed 310
Helix 62
62
E
19 31Right-handed alpha
Helix 63
63
E
41 52Right-handed alpha
Helix 64
64
E
53 55Right-handed 310
Helix 65
65
E
69 85Right-handed alpha
Helix 66
66
E
98 102Right-handed 310
Helix 67
67
E
105 109Right-handed 310
Helix 68
68
E
110 122Right-handed alpha
Helix 69
69
E
122 134Right-handed alpha
Helix 70
70
E
147 151Right-handed 310
Helix 71
71
E
158 179Right-handed alpha
Helix 72
72
E
196 201Right-handed 310
Helix 73
73
E
203 215Right-handed alpha
Helix 74
74
E
222 235Right-handed alpha
Helix 75
75
E
236 239Right-handed 310
Helix 76
76
E
251 254Right-handed 310
Helix 77
77
F
19 31Right-handed alpha
Helix 78
78
F
41 52Right-handed alpha
Helix 79
79
F
53 55Right-handed 310
Helix 80
80
F
69 85Right-handed alpha
Helix 81
81
F
98 103Right-handed alpha
Helix 82
82
F
105 109Right-handed 310
Helix 83
83
F
110 122Right-handed alpha
Helix 84
84
F
122 134Right-handed alpha
Helix 85
85
F
147 151Right-handed 310
Helix 86
86
F
157 179Right-handed alpha
Helix 87
87
F
196 200Right-handed 310
Helix 88
88
F
203 215Right-handed alpha
Helix 89
89
F
222 235Right-handed alpha
Helix 90
90
F
236 239Right-handed 310
Helix 91
91
F
251 254Right-handed 310
Helix 92
92
G
19 31Right-handed alpha
Helix 93
93
G
41 52Right-handed alpha
Helix 94
94
G
69 85Right-handed alpha
Helix 95
95
G
98 103Right-handed 310
Helix 96
96
G
105 109Right-handed 310
Helix 97
97
G
110 122Right-handed alpha
Helix 98
98
G
122 134Right-handed alpha
Helix 99
99
G
147 151Right-handed 310
Helix 100
100
G
157 179Right-handed alpha
Helix 101
101
G
196 201Right-handed 310
Helix 102
102
G
203 215Right-handed alpha
Helix 103
103
G
222 235Right-handed alpha
Helix 104
104
G
236 239Right-handed 310
Helix 105
105
G
251 254Right-handed 310
Helix 106
106
H
19 31Right-handed alpha
Helix 107
107
H
41 55Right-handed alpha
Helix 108
108
H
69 85Right-handed alpha
Helix 109
109
H
98 103Right-handed 310
Helix 110
110
H
105 109Right-handed 310
Helix 111
111
H
110 122Right-handed alpha
Helix 112
112
H
122 134Right-handed alpha
Helix 113
113
H
147 151Right-handed 310
Helix 114
114
H
157 179Right-handed alpha
Helix 115
115
H
196 201Right-handed 310
Helix 116
116
H
203 215Right-handed alpha
Helix 117
117
H
222 235Right-handed alpha
Helix 118
118
H
236 239Right-handed 310
Helix 119
119
H
251 254Right-handed 310
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There are 8 sheets in PDB entry 4ALJ. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
34 39parallel
Strand 3
A
8 12parallel
Strand 4
A
89 92parallel
Strand 5
A
140 146parallel
Strand 6
A
183 190parallel
Strand 7
A
245 248parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
34 39parallel
Strand 3
B
8 12parallel
Strand 4
B
89 92parallel
Strand 5
B
140 146parallel
Strand 6
B
183 190parallel
Strand 7
B
245 248parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 64first strand
Strand 2
C
34 39parallel
Strand 3
C
8 12parallel
Strand 4
C
89 92parallel
Strand 5
C
140 146parallel
Strand 6
C
183 190parallel
Strand 7
C
245 248parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 64first strand
Strand 2
D
34 39parallel
Strand 3
D
8 12parallel
Strand 4
D
89 92parallel
Strand 5
D
140 146parallel
Strand 6
D
183 190parallel
Strand 7
D
245 248parallel
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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
62 64first strand
Strand 2
E
34 39parallel
Strand 3
E
8 12parallel
Strand 4
E
89 92parallel
Strand 5
E
140 146parallel
Strand 6
E
183 190parallel
Strand 7
E
245 248parallel
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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
62 64first strand
Strand 2
F
34 39parallel
Strand 3
F
8 12parallel
Strand 4
F
89 92parallel
Strand 5
F
140 146parallel
Strand 6
F
183 190parallel
Strand 7
F
245 248parallel
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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
62 64first strand
Strand 2
G
34 39parallel
Strand 3
G
8 12parallel
Strand 4
G
89 92parallel
Strand 5
G
140 146parallel
Strand 6
G
183 190parallel
Strand 7
G
244 248parallel
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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
62 64first strand
Strand 2
H
34 39parallel
Strand 3
H
8 12parallel
Strand 4
H
89 92parallel
Strand 5
H
140 146parallel
Strand 6
H
183 190parallel
Strand 7
H
245 248parallel
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