Analysis of interatomic Contacts of Structural Units in PDB entry:
4AM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AM7 entry

There are 2 chains in PDB entry 4AM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 259TYR 881
B
 GLU 259GLN 874
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 4AM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
321 341Right-handed alpha
Helix 2
2
A
387 391Right-handed alpha
Helix 3
3
A
418 433Right-handed alpha
Helix 4
4
A
460 473Right-handed alpha
Helix 5
5
A
484 492Right-handed alpha
Helix 6
6
A
530 544Right-handed alpha
Helix 7
7
A
557 569Right-handed alpha
Helix 8
8
A
603 607Right-handed alpha
Helix 9
9
A
615 620Right-handed alpha
Helix 10
10
A
628 633Right-handed alpha
Helix 11
11
A
651 658Right-handed alpha
Helix 12
12
A
668 685Right-handed alpha
Helix 13
13
A
703 717Right-handed alpha
Helix 14
14
A
722 728Right-handed alpha
Helix 15
15
A
742 753Right-handed alpha
Helix 16
16
A
763 781Right-handed alpha
Helix 17
17
A
797 815Right-handed alpha
Helix 18
18
A
840 851Right-handed alpha
Helix 19
19
A
854 858Right-handed alpha
Helix 20
20
A
862 868Right-handed alpha
Helix 21
21
B
321 341Right-handed alpha
Helix 22
22
B
387 391Right-handed alpha
Helix 23
23
B
418 433Right-handed alpha
Helix 24
24
B
460 473Right-handed alpha
Helix 25
25
B
484 492Right-handed alpha
Helix 26
26
B
530 544Right-handed alpha
Helix 27
27
B
557 569Right-handed alpha
Helix 28
28
B
603 607Right-handed alpha
Helix 29
29
B
615 620Right-handed alpha
Helix 30
30
B
628 633Right-handed alpha
Helix 31
31
B
651 658Right-handed alpha
Helix 32
32
B
668 685Right-handed alpha
Helix 33
33
B
703 717Right-handed alpha
Helix 34
34
B
722 728Right-handed alpha
Helix 35
35
B
742 753Right-handed alpha
Helix 36
36
B
763 781Right-handed alpha
Helix 37
37
B
797 815Right-handed alpha
Helix 38
38
B
840 851Right-handed alpha
Helix 39
39
B
854 858Right-handed alpha
Helix 40
40
B
862 868Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 4AM7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
277 281anti-parallel
Strand 3
A
268 272anti-parallel
Strand 4
A
449 454parallel
Strand 5
A
478 483parallel
Strand 6
A
860 861anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
295 298anti-parallel
Strand 3
A
397 400anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 360first strand
Strand 2
A
593 600anti-parallel
Strand 3
A
580 586anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 518first strand
Strand 2
A
508 514parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 526first strand
Strand 2
A
508 514anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 830first strand
Strand 2
A
730 733parallel
Strand 3
A
498 503parallel
Strand 4
A
508 514anti-parallel
Strand 5
A
517 518parallel
Back to list of sheets
Back to top of page

There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 830first strand
Strand 2
A
730 733parallel
Strand 3
A
498 503parallel
Strand 4
A
508 514anti-parallel
Strand 5
A
524 526anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
277 281anti-parallel
Strand 3
A
268 272anti-parallel
Strand 4
A
449 454parallel
Strand 5
A
478 483parallel
Strand 6
A
860 861anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
295 298anti-parallel
Strand 3
A
397 400anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 360first strand
Strand 2
A
593 600anti-parallel
Strand 3
A
580 586anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 518first strand
Strand 2
A
508 514parallel
Back to list of sheets
Back to top of page

There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 526first strand
Strand 2
A
508 514anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 830first strand
Strand 2
A
730 733parallel
Strand 3
A
498 503parallel
Strand 4
A
508 514anti-parallel
Strand 5
A
517 518parallel
Back to list of sheets
Back to top of page

There are 5 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 830first strand
Strand 2
A
730 733parallel
Strand 3
A
498 503parallel
Strand 4
A
508 514anti-parallel
Strand 5
A
524 526anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il