Analysis of interatomic Contacts of Structural Units in PDB entry:
4AM8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4AM8 entry

There are 4 chains in PDB entry 4AM8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 336
B	MET 1	SER 338
C	MET 1	THR 336
D	MET 1	PHE 291

There are 78 helices in PDB entry 4AM8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	13	32	Right-handed alpha
Helix 2	2	A	53	66	Right-handed alpha
Helix 3	3	A	83	94	Right-handed alpha
Helix 4	4	A	106	117	Right-handed alpha
Helix 5	5	A	130	144	Right-handed alpha
Helix 6	6	A	163	176	Right-handed alpha
Helix 7	7	A	191	206	Right-handed alpha
Helix 8	8	A	214	219	Right-handed 310
Helix 9	9	A	238	247	Right-handed alpha
Helix 10	10	A	253	261	Right-handed alpha
Helix 11	11	A	279	284	Right-handed alpha
Helix 12	12	A	289	316	Right-handed alpha
Helix 13	13	A	319	336	Right-handed alpha
Helix 14	14	B	13	32	Right-handed alpha
Helix 15	15	B	53	66	Right-handed alpha
Helix 16	16	B	85	94	Right-handed alpha
Helix 17	17	B	106	117	Right-handed alpha
Helix 18	18	B	130	144	Right-handed alpha
Helix 19	19	B	163	176	Right-handed alpha
Helix 20	20	B	191	206	Right-handed alpha
Helix 21	21	B	214	219	Right-handed 310
Helix 22	22	B	238	247	Right-handed alpha
Helix 23	23	B	253	261	Right-handed alpha
Helix 24	24	B	279	284	Right-handed alpha
Helix 25	25	B	289	316	Right-handed alpha
Helix 26	26	B	319	336	Right-handed alpha
Helix 27	27	C	13	32	Right-handed alpha
Helix 28	28	C	53	66	Right-handed alpha
Helix 29	29	C	86	94	Right-handed alpha
Helix 30	30	C	106	117	Right-handed alpha
Helix 31	31	C	130	144	Right-handed alpha
Helix 32	32	C	163	176	Right-handed alpha
Helix 33	33	C	191	206	Right-handed alpha
Helix 34	34	C	214	219	Right-handed 310
Helix 35	35	C	238	247	Right-handed alpha
Helix 36	36	C	253	261	Right-handed alpha
Helix 37	37	C	279	284	Right-handed alpha
Helix 38	38	C	289	316	Right-handed alpha
Helix 39	40	D	13	32	Right-handed alpha
Helix 40	41	D	53	66	Right-handed alpha
Helix 41	42	D	86	94	Right-handed alpha
Helix 42	43	D	106	117	Right-handed alpha
Helix 43	44	D	130	144	Right-handed alpha
Helix 44	45	D	163	176	Right-handed alpha
Helix 45	46	D	191	206	Right-handed alpha
Helix 46	47	D	214	219	Right-handed 310
Helix 47	48	D	238	247	Right-handed alpha
Helix 48	49	D	253	261	Right-handed alpha
Helix 49	50	D	279	284	Right-handed alpha
Helix 50	51	D	289	316	Right-handed alpha
Helix 51	52	D	319	334	Right-handed alpha
Helix 52	53	D	339	348	Right-handed alpha
Helix 53	53	E	13	32	Right-handed alpha
Helix 54	54	E	53	66	Right-handed alpha
Helix 55	55	E	86	94	Right-handed alpha
Helix 56	56	E	106	117	Right-handed alpha
Helix 57	57	E	130	144	Right-handed alpha
Helix 58	58	E	163	176	Right-handed alpha
Helix 59	69	E	191	206	Right-handed alpha
Helix 60	60	E	214	219	Right-handed 310
Helix 61	61	E	238	247	Right-handed alpha
Helix 62	62	E	253	261	Right-handed alpha
Helix 63	63	E	279	284	Right-handed alpha
Helix 64	64	E	289	316	Right-handed alpha
Helix 65	65	E	319	336	Right-handed alpha
Helix 66	77	F	13	32	Right-handed alpha
Helix 67	78	F	53	67	Right-handed alpha
Helix 68	79	F	86	94	Right-handed alpha
Helix 69	80	F	106	117	Right-handed alpha
Helix 70	81	F	130	144	Right-handed alpha
Helix 71	83	F	163	176	Right-handed alpha
Helix 72	84	F	191	206	Right-handed alpha
Helix 73	85	F	214	219	Right-handed 310
Helix 74	86	F	238	247	Right-handed alpha
Helix 75	87	F	253	261	Right-handed alpha
Helix 76	88	F	279	284	Right-handed alpha
Helix 77	89	F	289	316	Right-handed alpha
Helix 78	90	F	319	335	Right-handed alpha

There are 12 sheets in PDB entry 4AM8. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	73	first strand
Strand 2	A	43	48	parallel
Strand 3	A	99	103	parallel
Strand 4	A	121	123	parallel
Strand 5	A	5	6	parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	212	first strand
Strand 2	A	179	183	parallel
Strand 3	A	155	159	parallel
Strand 4	A	223	226	parallel
Strand 5	A	265	268	parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	73	first strand
Strand 2	B	43	48	parallel
Strand 3	B	99	103	parallel
Strand 4	B	121	123	parallel
Strand 5	B	5	6	parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	179	183	parallel
Strand 3	B	155	159	parallel
Strand 4	B	223	226	parallel
Strand 5	B	265	268	parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	73	first strand
Strand 2	C	43	48	parallel
Strand 3	C	99	103	parallel
Strand 4	C	121	123	parallel
Strand 5	C	5	6	parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	212	first strand
Strand 2	C	179	183	parallel
Strand 3	C	155	159	parallel
Strand 4	C	223	226	parallel
Strand 5	C	265	268	parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	73	first strand
Strand 2	D	43	48	parallel
Strand 3	D	99	103	parallel
Strand 4	D	121	123	parallel
Strand 5	D	5	6	parallel

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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	212	first strand
Strand 2	D	179	183	parallel
Strand 3	D	155	159	parallel
Strand 4	D	223	226	parallel
Strand 5	D	265	268	parallel

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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	73	first strand
Strand 2	E	43	48	parallel
Strand 3	E	99	103	parallel
Strand 4	E	121	123	parallel
Strand 5	E	5	6	parallel

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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	212	first strand
Strand 2	E	179	183	parallel
Strand 3	E	155	159	parallel
Strand 4	E	223	226	parallel
Strand 5	E	265	268	parallel

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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	73	first strand
Strand 2	F	43	48	parallel
Strand 3	F	99	103	parallel
Strand 4	F	121	123	parallel
Strand 5	F	5	6	parallel

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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	212	first strand
Strand 2	F	179	183	parallel
Strand 3	F	155	159	parallel
Strand 4	F	223	226	parallel
Strand 5	F	265	268	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4AM8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4AM8