Analysis of interatomic Contacts of Structural Units in PDB entry:
4AMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AMA entry

There are 8 chains in PDB entry 4AMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1VAL 164
A
 TYR 166LEU 293
B
 HIS 0VAL 164
B
 TYR 166LEU 293
C
 HIS -4VAL 164
C
 TYR 166LEU 293
D
 LYS 3VAL 164
D
 TYR 166LEU 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 4AMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 36Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
51 55Right-handed 310
Helix 4
4
A
56 71Right-handed alpha
Helix 5
5
A
85 100Right-handed alpha
Helix 6
6
A
115 131Right-handed alpha
Helix 7
7
A
139 144Right-handed alpha
Helix 8
8
A
148 157Right-handed alpha
Helix 9
9
A
170 181Right-handed alpha
Helix 10
10
A
190 192Right-handed 310
Helix 11
11
A
193 199Right-handed alpha
Helix 12
12
A
209 226Right-handed alpha
Helix 13
13
A
228 250Right-handed alpha
Helix 14
14
A
250 262Right-handed alpha
Helix 15
15
A
277 279Right-handed 310
Helix 16
16
A
280 292Right-handed alpha
Helix 17
17
B
0 4Right-handed 310
Helix 18
18
B
23 36Right-handed alpha
Helix 19
19
B
47 51Right-handed 310
Helix 20
20
B
51 55Right-handed 310
Helix 21
21
B
56 70Right-handed alpha
Helix 22
22
B
85 99Right-handed alpha
Helix 23
23
B
115 131Right-handed alpha
Helix 24
24
B
139 144Right-handed alpha
Helix 25
25
B
148 157Right-handed alpha
Helix 26
26
B
170 181Right-handed alpha
Helix 27
27
B
190 192Right-handed 310
Helix 28
28
B
193 200Right-handed alpha
Helix 29
29
B
209 226Right-handed alpha
Helix 30
30
B
228 249Right-handed alpha
Helix 31
31
B
250 262Right-handed alpha
Helix 32
32
B
277 279Right-handed 310
Helix 33
33
B
280 292Right-handed alpha
Helix 34
34
C
23 37Right-handed alpha
Helix 35
35
C
47 51Right-handed 310
Helix 36
36
C
51 55Right-handed 310
Helix 37
37
C
56 70Right-handed alpha
Helix 38
38
C
85 100Right-handed alpha
Helix 39
39
C
115 131Right-handed alpha
Helix 40
40
C
139 144Right-handed alpha
Helix 41
41
C
148 157Right-handed alpha
Helix 42
42
C
170 181Right-handed alpha
Helix 43
43
C
190 192Right-handed 310
Helix 44
44
C
193 200Right-handed alpha
Helix 45
45
C
209 226Right-handed alpha
Helix 46
46
C
228 250Right-handed alpha
Helix 47
47
C
250 261Right-handed alpha
Helix 48
48
C
277 279Right-handed 310
Helix 49
49
C
280 292Right-handed alpha
Helix 50
50
D
23 37Right-handed alpha
Helix 51
51
D
47 51Right-handed 310
Helix 52
52
D
51 55Right-handed 310
Helix 53
53
D
56 71Right-handed alpha
Helix 54
54
D
85 100Right-handed alpha
Helix 55
55
D
115 131Right-handed alpha
Helix 56
56
D
139 144Right-handed alpha
Helix 57
57
D
148 157Right-handed alpha
Helix 58
58
D
170 181Right-handed alpha
Helix 59
59
D
190 192Right-handed 310
Helix 60
60
D
193 200Right-handed alpha
Helix 61
61
D
209 226Right-handed alpha
Helix 62
62
D
228 250Right-handed alpha
Helix 63
63
D
250 262Right-handed alpha
Helix 64
64
D
277 279Right-handed 310
Helix 65
65
D
280 292Right-handed alpha
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There are 4 sheets in PDB entry 4AMA. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
204 207parallel
Strand 3
A
185 188parallel
Strand 4
A
161 164parallel
Strand 5
A
134 137parallel
Strand 6
A
103 107parallel
Strand 7
A
76 80parallel
Strand 8
A
42 45parallel
Strand 9
A
7 11parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
204 207parallel
Strand 3
B
185 188parallel
Strand 4
B
161 164parallel
Strand 5
B
134 137parallel
Strand 6
B
103 107parallel
Strand 7
B
76 80parallel
Strand 8
B
42 45parallel
Strand 9
B
7 11parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 11first strand
Strand 2
C
204 207parallel
Strand 3
C
185 188parallel
Strand 4
C
161 164parallel
Strand 5
C
134 137parallel
Strand 6
C
103 107parallel
Strand 7
C
76 80parallel
Strand 8
C
42 45parallel
Strand 9
C
7 11parallel
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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 11first strand
Strand 2
D
204 207parallel
Strand 3
D
185 188parallel
Strand 4
D
161 164parallel
Strand 5
D
134 137parallel
Strand 6
D
103 107parallel
Strand 7
D
76 80parallel
Strand 8
D
42 45parallel
Strand 9
D
7 11parallel
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