Analysis of interatomic Contacts of Structural Units in PDB entry:
4AMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AMB entry

There are 2 chains in PDB entry 4AMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12ALA 389
B
 GLN 11GLY 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 4AMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 27Right-handed alpha
Helix 2
2
A
29 39Right-handed alpha
Helix 3
3
A
51 56Right-handed alpha
Helix 4
4
A
69 75Right-handed alpha
Helix 5
5
A
91 105Right-handed alpha
Helix 6
6
A
106 118Right-handed alpha
Helix 7
7
A
129 138Right-handed alpha
Helix 8
8
A
148 152Right-handed 310
Helix 9
9
A
155 164Right-handed alpha
Helix 10
10
A
164 171Right-handed alpha
Helix 11
11
A
187 193Right-handed alpha
Helix 12
12
A
195 199Right-handed 310
Helix 13
13
A
242 246Right-handed 310
Helix 14
14
A
247 252Right-handed alpha
Helix 15
15
A
253 257Right-handed 310
Helix 16
16
A
269 273Right-handed 310
Helix 17
17
A
287 293Right-handed alpha
Helix 18
18
A
303 314Right-handed alpha
Helix 19
19
A
329 336Right-handed alpha
Helix 20
20
A
343 347Right-handed 310
Helix 21
21
A
348 358Right-handed alpha
Helix 22
22
A
358 374Right-handed alpha
Helix 23
23
A
377 389Right-handed alpha
Helix 24
24
B
22 27Right-handed alpha
Helix 25
25
B
29 39Right-handed alpha
Helix 26
26
B
51 56Right-handed alpha
Helix 27
27
B
69 75Right-handed alpha
Helix 28
28
B
91 105Right-handed alpha
Helix 29
29
B
106 118Right-handed alpha
Helix 30
30
B
129 138Right-handed alpha
Helix 31
31
B
148 152Right-handed 310
Helix 32
32
B
155 164Right-handed alpha
Helix 33
33
B
164 171Right-handed alpha
Helix 34
34
B
187 193Right-handed alpha
Helix 35
35
B
195 199Right-handed 310
Helix 36
36
B
244 246Right-handed 310
Helix 37
37
B
247 252Right-handed alpha
Helix 38
38
B
253 257Right-handed 310
Helix 39
39
B
269 273Right-handed 310
Helix 40
40
B
287 293Right-handed alpha
Helix 41
41
B
303 314Right-handed alpha
Helix 42
42
B
328 336Right-handed alpha
Helix 43
43
B
343 347Right-handed 310
Helix 44
44
B
348 358Right-handed alpha
Helix 45
45
B
358 374Right-handed alpha
Helix 46
46
B
377 390Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4AMB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
180 184parallel
Strand 3
A
142 144parallel
Strand 4
A
121 124parallel
Strand 5
A
14 18parallel
Strand 6
A
42 47parallel
Strand 7
A
60 63parallel
Strand 8
B
215 217parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
B
60 63parallel
Strand 3
B
42 47parallel
Strand 4
B
14 18parallel
Strand 5
B
121 124parallel
Strand 6
B
142 144parallel
Strand 7
B
180 184parallel
Strand 8
B
204 205parallel
Back to list of sheets
Back to top of page

There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
260 264parallel
Strand 3
A
229 233parallel
Strand 4
A
297 300parallel
Strand 5
A
317 319parallel
Strand 6
A
339 341parallel
Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 283first strand
Strand 2
B
260 264parallel
Strand 3
B
229 233parallel
Strand 4
B
297 300parallel
Strand 5
B
317 319parallel
Strand 6
B
339 341parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il