Analysis of interatomic Contacts of Structural Units in PDB entry:
4AMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AMC entry

There is 1 chain in PDB entry 4AMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 745ASP 1763
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4AMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
781 783Right-handed 310
Helix 2
2
A
794 800Right-handed alpha
Helix 3
3
A
831 833Right-handed 310
Helix 4
4
A
847 849Right-handed 310
Helix 5
5
A
853 867Right-handed alpha
Helix 6
6
A
883 906Right-handed alpha
Helix 7
7
A
908 922Right-handed alpha
Helix 8
8
A
926 930Right-handed 310
Helix 9
9
A
965 969Right-handed 310
Helix 10
10
A
989 1005Right-handed alpha
Helix 11
11
A
1005 1012Right-handed alpha
Helix 12
12
A
1031 1045Right-handed alpha
Helix 13
13
A
1049 1054Right-handed alpha
Helix 14
14
A
1066 1074Right-handed alpha
Helix 15
15
A
1082 1094Right-handed alpha
Helix 16
16
A
1102 1108Right-handed alpha
Helix 17
17
A
1136 1148Right-handed alpha
Helix 18
18
A
1155 1172Right-handed alpha
Helix 19
19
A
1182 1191Right-handed alpha
Helix 20
20
A
1202 1206Right-handed alpha
Helix 21
21
A
1219 1233Right-handed alpha
Helix 22
22
A
1270 1275Right-handed 310
Helix 23
23
A
1423 1426Right-handed 310
Helix 24
24
A
1427 1435Right-handed alpha
Helix 25
25
A
1435 1442Right-handed alpha
Helix 26
26
A
1461 1465Right-handed 310
Helix 27
27
A
1488 1502Right-handed alpha
Helix 28
28
A
1554 1561Right-handed alpha
Helix 29
29
A
1564 1572Right-handed alpha
Helix 30
30
A
1597 1599Right-handed 310
Helix 31
31
A
1634 1639Right-handed alpha
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There are 14 sheets in PDB entry 4AMC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
777 779first strand
Strand 2
A
766 770anti-parallel
Strand 3
A
759 763anti-parallel
Strand 4
A
1717 1721parallel
Strand 5
A
1724 1728anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 823first strand
Strand 2
A
844 845anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
827 830first strand
Strand 2
A
834 837anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1514 1515first strand
Strand 2
A
983 985anti-parallel
Strand 3
A
1601 1605anti-parallel
Strand 4
A
943 946anti-parallel
Strand 5
A
1520 1529anti-parallel
Strand 6
A
1542 1551anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1059 1060first strand
Strand 2
A
1020 1023parallel
Strand 3
A
1507 1510parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1080 1081first strand
Strand 2
A
1125 1128parallel
Strand 3
A
1197 1201parallel
Strand 4
A
1410 1412parallel
Strand 5
A
1446 1448parallel
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There are 7 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1115 1116first strand
Strand 2
A
1238 1242anti-parallel
Strand 3
A
1252 1256anti-parallel
Strand 4
A
1277 1282anti-parallel
Strand 5
A
1369 1375anti-parallel
Strand 6
A
1307 1314anti-parallel
Strand 7
A
1319 1321anti-parallel
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There are 7 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1115 1116first strand
Strand 2
A
1238 1242anti-parallel
Strand 3
A
1252 1256anti-parallel
Strand 4
A
1277 1282anti-parallel
Strand 5
A
1369 1375anti-parallel
Strand 6
A
1307 1314anti-parallel
Strand 7
A
1330 1332parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1319 1321first strand
Strand 2
A
1307 1314anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1294 1298first strand
Strand 2
A
1338 1342anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1647 1650first strand
Strand 2
A
1656 1659anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1669 1672first strand
Strand 2
A
1678 1681anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1693 1696first strand
Strand 2
A
1703 1706anti-parallel
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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1738 1742first strand
Strand 2
A
1745 1749anti-parallel
Strand 3
A
1755 1760anti-parallel
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