Analysis of interatomic Contacts of Structural Units in PDB entry:
4AML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AML entry

There are 2 chains in PDB entry 4AML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2GLY 171
B
 ARG 2ASP 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4AML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
12 16Right-handed 310
Helix 3
AA3
A
27 32Right-handed alpha
Helix 4
AA4
A
46 51Right-handed 310
Helix 5
AA5
A
70 75Right-handed alpha
Helix 6
AA6
A
89 94Right-handed 310
Helix 7
AA7
A
98 102Right-handed 310
Helix 8
AA8
A
113 118Right-handed alpha
Helix 9
AA9
A
141 145Right-handed 310
Helix 10
AB1
A
156 161Right-handed alpha
Helix 11
AB2
B
3 8Right-handed 310
Helix 12
AB3
B
12 16Right-handed 310
Helix 13
AB4
B
27 32Right-handed alpha
Helix 14
AB5
B
46 51Right-handed 310
Helix 15
AB6
B
70 75Right-handed alpha
Helix 16
AB7
B
89 94Right-handed 310
Helix 17
AB8
B
98 102Right-handed 310
Helix 18
AB9
B
113 118Right-handed alpha
Helix 19
AC1
B
133 137Right-handed 310
Helix 20
AC2
B
141 145Right-handed 310
Helix 21
AC3
B
156 161Right-handed alpha
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There are 8 sheets in PDB entry 4AML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
24 25anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
67 68anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
110 111anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
153 154anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
24 25anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
67 68anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
110 111anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 147first strand
Strand 2
B
153 154anti-parallel
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