Analysis of interatomic Contacts of Structural Units in PDB entry:
4AMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AMP entry

There is 1 chain in PDB entry 4AMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 476ARG 876
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4AMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
487 503Right-handed alpha
Helix 2
2
A
506 521Right-handed alpha
Helix 3
3
A
535 552Right-handed alpha
Helix 4
4
A
560 562Right-handed 310
Helix 5
5
A
618 640Right-handed alpha
Helix 6
6
A
652 661Right-handed alpha
Helix 7
7
A
665 683Right-handed alpha
Helix 8
8
A
696 705Right-handed alpha
Helix 9
9
A
726 740Right-handed alpha
Helix 10
10
A
754 759Right-handed 310
Helix 11
11
A
760 770Right-handed alpha
Helix 12
12
A
793 804Right-handed alpha
Helix 13
13
A
808 815Right-handed alpha
Helix 14
14
A
827 836Right-handed alpha
Helix 15
15
A
850 863Right-handed alpha
Helix 16
16
A
869 873Right-handed 310
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There are 3 sheets in PDB entry 4AMP. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 485first strand
Strand 2
A
527 533anti-parallel
Strand 3
A
564 568anti-parallel
Strand 4
A
556 559anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
780 782first strand
Strand 2
A
646 649parallel
Strand 3
A
574 578parallel
Strand 4
A
819 822parallel
Strand 5
A
840 842parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 745first strand
Strand 2
A
688 693anti-parallel
Strand 3
A
719 725anti-parallel
Strand 4
A
710 716anti-parallel
Strand 5
A
806 807parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il