Analysis of interatomic Contacts of Structural Units in PDB entry:
4AMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AMU entry

There are 4 chains in PDB entry 4AMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS -1TYR 342
B
 LYS -1TYR 342
C
 LYS -1TYR 342
D
 LYS -1TYR 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 4AMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
17 37Right-handed alpha
Helix 3
3
A
59 74Right-handed alpha
Helix 4
4
A
81 86Right-handed alpha
Helix 5
5
A
92 104Right-handed alpha
Helix 6
6
A
113 125Right-handed alpha
Helix 7
7
A
137 153Right-handed alpha
Helix 8
8
A
168 181Right-handed alpha
Helix 9
9
A
190 197Right-handed 310
Helix 10
10
A
198 213Right-handed alpha
Helix 11
11
A
221 226Right-handed alpha
Helix 12
12
A
243 255Right-handed alpha
Helix 13
13
A
260 267Right-handed alpha
Helix 14
14
A
285 295Right-handed alpha
Helix 15
15
A
299 305Right-handed 310
Helix 16
16
A
310 316Right-handed alpha
Helix 17
17
A
320 341Right-handed alpha
Helix 18
18
B
12 16Right-handed 310
Helix 19
19
B
17 37Right-handed alpha
Helix 20
20
B
59 74Right-handed alpha
Helix 21
21
B
81 86Right-handed alpha
Helix 22
22
B
92 104Right-handed alpha
Helix 23
23
B
113 125Right-handed alpha
Helix 24
24
B
137 153Right-handed alpha
Helix 25
25
B
168 181Right-handed alpha
Helix 26
26
B
190 197Right-handed 310
Helix 27
27
B
198 213Right-handed alpha
Helix 28
28
B
221 226Right-handed alpha
Helix 29
29
B
245 255Right-handed alpha
Helix 30
30
B
256 258Right-handed 310
Helix 31
31
B
260 266Right-handed alpha
Helix 32
32
B
285 295Right-handed alpha
Helix 33
33
B
299 303Right-handed 310
Helix 34
34
B
310 315Right-handed alpha
Helix 35
35
B
320 341Right-handed alpha
Helix 36
36
C
12 16Right-handed 310
Helix 37
37
C
17 37Right-handed alpha
Helix 38
38
C
59 74Right-handed alpha
Helix 39
39
C
81 86Right-handed alpha
Helix 40
40
C
92 104Right-handed alpha
Helix 41
41
C
113 125Right-handed alpha
Helix 42
42
C
137 153Right-handed alpha
Helix 43
43
C
168 181Right-handed alpha
Helix 44
44
C
190 196Right-handed 310
Helix 45
45
C
198 213Right-handed alpha
Helix 46
46
C
221 226Right-handed alpha
Helix 47
47
C
243 255Right-handed alpha
Helix 48
48
C
256 258Right-handed 310
Helix 49
49
C
260 267Right-handed alpha
Helix 50
50
C
285 293Right-handed alpha
Helix 51
51
C
299 303Right-handed 310
Helix 52
52
C
310 315Right-handed alpha
Helix 53
53
C
320 341Right-handed alpha
Helix 54
54
D
12 16Right-handed 310
Helix 55
55
D
17 37Right-handed alpha
Helix 56
56
D
59 74Right-handed alpha
Helix 57
57
D
81 85Right-handed 310
Helix 58
58
D
92 104Right-handed alpha
Helix 59
59
D
113 125Right-handed alpha
Helix 60
60
D
137 153Right-handed alpha
Helix 61
61
D
168 181Right-handed alpha
Helix 62
62
D
190 197Right-handed 310
Helix 63
63
D
198 213Right-handed alpha
Helix 64
64
D
221 226Right-handed alpha
Helix 65
65
D
243 255Right-handed alpha
Helix 66
66
D
256 258Right-handed 310
Helix 67
67
D
260 267Right-handed alpha
Helix 68
68
D
285 295Right-handed alpha
Helix 69
69
D
299 305Right-handed 310
Helix 70
70
D
310 315Right-handed alpha
Helix 71
71
D
320 341Right-handed alpha
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There are 8 sheets in PDB entry 4AMU. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
50 55parallel
Strand 3
A
106 110parallel
Strand 4
A
128 132parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 219first strand
Strand 2
A
184 188parallel
Strand 3
A
159 163parallel
Strand 4
A
231 234parallel
Strand 5
A
272 274parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
50 55parallel
Strand 3
B
106 110parallel
Strand 4
B
128 130parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 219first strand
Strand 2
B
184 188parallel
Strand 3
B
159 163parallel
Strand 4
B
231 234parallel
Strand 5
B
272 274parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 80first strand
Strand 2
C
50 55parallel
Strand 3
C
106 110parallel
Strand 4
C
128 130parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
215 219first strand
Strand 2
C
184 188parallel
Strand 3
C
159 163parallel
Strand 4
C
231 234parallel
Strand 5
C
272 274parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 80first strand
Strand 2
D
50 55parallel
Strand 3
D
106 110parallel
Strand 4
D
128 132parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
215 219first strand
Strand 2
D
184 188parallel
Strand 3
D
159 163parallel
Strand 4
D
231 234parallel
Strand 5
D
272 274parallel
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