Analysis of interatomic Contacts of Structural Units in PDB entry:
4AMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AMV entry

There are 3 chains in PDB entry 4AMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1GLU 608
B
 CYS 1GLU 608
C
 CYS 1VAL 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 4AMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 24Right-handed alpha
Helix 2
2
A
25 27Right-handed 310
Helix 3
3
A
50 61Right-handed alpha
Helix 4
4
A
81 85Right-handed 310
Helix 5
5
A
103 114Right-handed alpha
Helix 6
6
A
122 136Right-handed alpha
Helix 7
7
A
140 149Right-handed alpha
Helix 8
8
A
150 152Right-handed 310
Helix 9
9
A
192 196Right-handed 310
Helix 10
10
A
250 258Right-handed alpha
Helix 11
11
A
258 268Right-handed alpha
Helix 12
12
A
278 282Right-handed 310
Helix 13
13
A
284 292Right-handed alpha
Helix 14
14
A
300 318Right-handed alpha
Helix 15
15
A
327 331Right-handed alpha
Helix 16
16
A
352 365Right-handed alpha
Helix 17
17
A
379 385Right-handed alpha
Helix 18
18
A
402 423Right-handed alpha
Helix 19
19
A
426 448Right-handed alpha
Helix 20
20
A
450 459Right-handed alpha
Helix 21
21
A
460 462Right-handed 310
Helix 22
22
A
472 474Right-handed 310
Helix 23
23
A
475 491Right-handed alpha
Helix 24
24
A
500 510Right-handed 310
Helix 25
25
A
525 539Right-handed alpha
Helix 26
26
A
568 570Right-handed 310
Helix 27
27
A
571 592Right-handed alpha
Helix 28
28
B
12 24Right-handed alpha
Helix 29
29
B
25 27Right-handed 310
Helix 30
30
B
51 58Right-handed alpha
Helix 31
31
B
103 113Right-handed alpha
Helix 32
32
B
122 136Right-handed alpha
Helix 33
33
B
140 149Right-handed alpha
Helix 34
34
B
192 196Right-handed 310
Helix 35
35
B
250 258Right-handed alpha
Helix 36
36
B
258 268Right-handed alpha
Helix 37
37
B
278 283Right-handed 310
Helix 38
38
B
284 290Right-handed alpha
Helix 39
39
B
301 317Right-handed alpha
Helix 40
40
B
327 331Right-handed alpha
Helix 41
41
B
352 365Right-handed alpha
Helix 42
42
B
379 385Right-handed alpha
Helix 43
43
B
402 423Right-handed alpha
Helix 44
44
B
427 448Right-handed alpha
Helix 45
45
B
450 459Right-handed alpha
Helix 46
46
B
460 462Right-handed 310
Helix 47
47
B
472 474Right-handed 310
Helix 48
48
B
475 491Right-handed alpha
Helix 49
49
B
500 510Right-handed 310
Helix 50
50
B
525 539Right-handed alpha
Helix 51
51
B
568 570Right-handed 310
Helix 52
52
B
571 591Right-handed alpha
Helix 53
53
C
12 24Right-handed alpha
Helix 54
54
C
25 27Right-handed 310
Helix 55
55
C
50 61Right-handed alpha
Helix 56
56
C
81 85Right-handed 310
Helix 57
57
C
103 113Right-handed alpha
Helix 58
58
C
122 137Right-handed alpha
Helix 59
59
C
140 149Right-handed alpha
Helix 60
60
C
150 152Right-handed 310
Helix 61
61
C
192 196Right-handed 310
Helix 62
62
C
250 258Right-handed alpha
Helix 63
63
C
258 268Right-handed alpha
Helix 64
64
C
278 282Right-handed 310
Helix 65
65
C
284 291Right-handed alpha
Helix 66
66
C
300 319Right-handed alpha
Helix 67
67
C
327 331Right-handed alpha
Helix 68
68
C
352 365Right-handed alpha
Helix 69
69
C
379 385Right-handed alpha
Helix 70
70
C
402 423Right-handed alpha
Helix 71
71
C
427 449Right-handed alpha
Helix 72
72
C
450 459Right-handed alpha
Helix 73
73
C
460 462Right-handed 310
Helix 74
74
C
472 474Right-handed 310
Helix 75
75
C
475 491Right-handed alpha
Helix 76
76
C
500 510Right-handed 310
Helix 77
77
C
525 538Right-handed alpha
Helix 78
78
C
568 570Right-handed 310
Helix 79
79
C
571 592Right-handed alpha
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There are 15 sheets in PDB entry 4AMV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 48first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
67 73anti-parallel
Strand 4
A
2 7anti-parallel
Strand 5
A
187 190anti-parallel
Strand 6
A
179 182anti-parallel
Strand 7
A
202 205anti-parallel
Strand 8
A
234 235anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
156 162anti-parallel
Strand 4
A
169 173anti-parallel
Strand 5
A
211 214anti-parallel
Strand 6
A
219 222anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
275 276anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
294 299parallel
Strand 3
A
341 347parallel
Strand 4
A
369 374parallel
Strand 5
A
387 390parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 498first strand
Strand 2
A
466 471parallel
Strand 3
A
515 520parallel
Strand 4
A
542 548parallel
Strand 5
A
559 564parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 48first strand
Strand 2
B
30 36anti-parallel
Strand 3
B
67 73anti-parallel
Strand 4
B
2 7anti-parallel
Strand 5
B
187 190anti-parallel
Strand 6
B
179 182anti-parallel
Strand 7
B
203 205anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
93 99anti-parallel
Strand 3
B
156 162anti-parallel
Strand 4
B
168 173anti-parallel
Strand 5
B
210 215anti-parallel
Strand 6
B
218 222anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
275 276anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 326first strand
Strand 2
B
294 299parallel
Strand 3
B
341 347parallel
Strand 4
B
369 374parallel
Strand 5
B
387 390parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
493 498first strand
Strand 2
B
466 471parallel
Strand 3
B
515 520parallel
Strand 4
B
542 548parallel
Strand 5
B
559 564parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 48first strand
Strand 2
C
30 36anti-parallel
Strand 3
C
67 73anti-parallel
Strand 4
C
2 7anti-parallel
Strand 5
C
187 190anti-parallel
Strand 6
C
179 182anti-parallel
Strand 7
C
202 205anti-parallel
Strand 8
C
234 235anti-parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 90first strand
Strand 2
C
93 99anti-parallel
Strand 3
C
156 162anti-parallel
Strand 4
C
169 173anti-parallel
Strand 5
C
211 214anti-parallel
Strand 6
C
219 222anti-parallel
Strand 7
C
228 229anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 272first strand
Strand 2
C
275 276anti-parallel
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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
322 326first strand
Strand 2
C
294 299parallel
Strand 3
C
341 347parallel
Strand 4
C
369 374parallel
Strand 5
C
387 390parallel
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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
493 498first strand
Strand 2
C
466 471parallel
Strand 3
C
515 520parallel
Strand 4
C
542 548parallel
Strand 5
C
559 564parallel
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