Analysis of interatomic Contacts of Structural Units in PDB entry:
4AOA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AOA entry

There are 2 chains in PDB entry 4AOA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ASN 434
B
 HIS 3ASN 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 4AOA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 21Right-handed alpha
Helix 2
2
A
21 32Right-handed alpha
Helix 3
3
A
35 39Right-handed 310
Helix 4
4
A
41 45Right-handed 310
Helix 5
5
A
73 78Right-handed 310
Helix 6
6
A
85 98Right-handed alpha
Helix 7
7
A
108 120Right-handed alpha
Helix 8
8
A
131 148Right-handed alpha
Helix 9
9
A
186 197Right-handed alpha
Helix 10
10
A
219 234Right-handed alpha
Helix 11
11
A
243 247Right-handed 310
Helix 12
12
A
251 257Right-handed alpha
Helix 13
13
A
268 271Right-handed 310
Helix 14
14
A
281 286Right-handed alpha
Helix 15
15
A
287 289Right-handed 310
Helix 16
16
A
304 318Right-handed alpha
Helix 17
17
A
320 346Right-handed alpha
Helix 18
18
A
369 374Right-handed 310
Helix 19
19
A
377 391Right-handed alpha
Helix 20
20
A
408 426Right-handed alpha
Helix 21
21
B
3 21Right-handed alpha
Helix 22
22
B
21 32Right-handed alpha
Helix 23
23
B
35 39Right-handed 310
Helix 24
24
B
41 45Right-handed 310
Helix 25
25
B
73 78Right-handed 310
Helix 26
26
B
85 99Right-handed alpha
Helix 27
27
B
108 120Right-handed alpha
Helix 28
28
B
131 148Right-handed alpha
Helix 29
29
B
186 197Right-handed alpha
Helix 30
30
B
219 234Right-handed alpha
Helix 31
31
B
243 248Right-handed 310
Helix 32
32
B
251 257Right-handed alpha
Helix 33
33
B
268 271Right-handed 310
Helix 34
34
B
281 286Right-handed alpha
Helix 35
35
B
287 289Right-handed 310
Helix 36
36
B
304 318Right-handed alpha
Helix 37
37
B
320 346Right-handed alpha
Helix 38
38
B
369 374Right-handed 310
Helix 39
39
B
378 391Right-handed alpha
Helix 40
40
B
408 426Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4AOA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 394first strand
Strand 2
A
68 71parallel
Strand 3
A
60 63anti-parallel
Strand 4
A
52 57anti-parallel
Strand 5
B
105 106parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
B
52 57parallel
Strand 3
B
60 63anti-parallel
Strand 4
B
68 71anti-parallel
Strand 5
B
393 394parallel
Back to list of sheets
Back to top of page

There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
276 280anti-parallel
Strand 3
A
262 266anti-parallel
Strand 4
A
236 240parallel
Strand 5
A
201 206parallel
Strand 6
A
151 155parallel
Strand 7
A
178 182parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
216 217anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 354first strand
Strand 2
A
357 361anti-parallel
Strand 3
A
400 402anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
276 280anti-parallel
Strand 3
B
262 266anti-parallel
Strand 4
B
236 240parallel
Strand 5
B
201 206parallel
Strand 6
B
151 155parallel
Strand 7
B
178 182parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
216 217anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 354first strand
Strand 2
B
357 361anti-parallel
Strand 3
B
400 402anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il