Analysis of interatomic Contacts of Structural Units in PDB entry:
4AOC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AOC entry

There are 5 chains in PDB entry 4AOC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 12GLY 128
B
ARG 9GLY 128
C
ARG 9GLY 128
D
GLY 11GLY 128
E
ASN 8GLY 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4AOC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
52 56Right-handed 310
Helix 2
2
B
52 56Right-handed 310
Helix 3
3
C
52 56Right-handed 310
Helix 4
4
D
52 56Right-handed 310
Helix 5
5
E
52 56Right-handed 310
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There are 35 sheets in PDB entry 4AOC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG, CA, CB, CC, CD, CE, CF, CG, A, DB, C, DD, DE, DF, G, EA, EB, EC, ED, EE, EF, EG,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
13 14first strand
Strand 2
A
68 75anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 51first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
78 79parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 51first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
13 14anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
78 79first strand
Strand 2
A
68 75parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
58 63first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
119 125anti-parallel
Strand 4
A
98 109anti-parallel
Strand 5
A
89 92parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
58 63first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
119 125anti-parallel
Strand 4
A
98 109anti-parallel
Strand 5
A
81 86anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
89 92first strand
Strand 2
A
98 109parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
12 14first strand
Strand 2
B
68 75anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 51first strand
Strand 2
B
33 39anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
78 79parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 51first strand
Strand 2
B
33 39anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
12 14anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
78 79first strand
Strand 2
B
68 75parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 63first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
119 125anti-parallel
Strand 4
B
98 109anti-parallel
Strand 5
B
89 92parallel
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There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 63first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
119 125anti-parallel
Strand 4
B
98 109anti-parallel
Strand 5
B
81 86anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
89 92first strand
Strand 2
B
98 109parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
12 14first strand
Strand 2
C
68 75anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
47 51first strand
Strand 2
C
33 39anti-parallel
Strand 3
C
68 75anti-parallel
Strand 4
C
78 79parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
47 51first strand
Strand 2
C
33 39anti-parallel
Strand 3
C
68 75anti-parallel
Strand 4
C
12 14anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
78 79first strand
Strand 2
C
68 75parallel
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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
58 63first strand
Strand 2
C
20 27anti-parallel
Strand 3
C
119 125anti-parallel
Strand 4
C
98 109anti-parallel
Strand 5
C
89 92parallel
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There are 5 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
58 63first strand
Strand 2
C
20 27anti-parallel
Strand 3
C
119 125anti-parallel
Strand 4
C
98 109anti-parallel
Strand 5
C
81 86anti-parallel
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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
89 92first strand
Strand 2
C
98 109parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
12 14first strand
Strand 2
D
68 75anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
47 51first strand
Strand 2
D
33 39anti-parallel
Strand 3
D
68 75anti-parallel
Strand 4
D
78 79parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
47 51first strand
Strand 2
D
33 39anti-parallel
Strand 3
D
68 75anti-parallel
Strand 4
D
12 14anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
78 79first strand
Strand 2
D
68 75parallel
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There are 5 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
58 63first strand
Strand 2
D
20 27anti-parallel
Strand 3
D
119 125anti-parallel
Strand 4
D
98 109anti-parallel
Strand 5
D
89 92parallel
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There are 5 strands in DF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
58 63first strand
Strand 2
D
20 27anti-parallel
Strand 3
D
119 125anti-parallel
Strand 4
D
98 109anti-parallel
Strand 5
D
81 86anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
89 92first strand
Strand 2
D
98 109parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
11 14first strand
Strand 2
E
68 75anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
47 51first strand
Strand 2
E
33 39anti-parallel
Strand 3
E
68 75anti-parallel
Strand 4
E
78 79parallel
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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
47 51first strand
Strand 2
E
33 39anti-parallel
Strand 3
E
68 75anti-parallel
Strand 4
E
11 14anti-parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
78 79first strand
Strand 2
E
68 75parallel
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There are 5 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
58 63first strand
Strand 2
E
20 27anti-parallel
Strand 3
E
119 125anti-parallel
Strand 4
E
98 109anti-parallel
Strand 5
E
89 92parallel
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There are 5 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
58 63first strand
Strand 2
E
20 27anti-parallel
Strand 3
E
119 125anti-parallel
Strand 4
E
98 109anti-parallel
Strand 5
E
81 86anti-parallel
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There are 2 strands in EG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
89 92first strand
Strand 2
E
98 109parallel
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