Analysis of interatomic Contacts of Structural Units in PDB entry:
4AOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AOF entry

There is 1 chain in PDB entry 4AOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 143ILE 1094
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4AOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
150 159Right-handed alpha
Helix 2
2
A
171 178Right-handed alpha
Helix 3
3
A
180 191Right-handed alpha
Helix 4
4
A
192 199Right-handed alpha
Helix 5
5
A
208 213Right-handed alpha
Helix 6
6
A
242 246Right-handed 310
Helix 7
7
A
286 289Right-handed 310
Helix 8
8
A
290 300Right-handed alpha
Helix 9
9
A
498 502Right-handed 310
Helix 10
10
A
548 561Right-handed alpha
Helix 11
11
A
568 584Right-handed alpha
Helix 12
12
A
585 587Right-handed 310
Helix 13
13
A
588 595Right-handed alpha
Helix 14
14
A
600 610Right-handed alpha
Helix 15
15
A
614 620Right-handed alpha
Helix 16
16
A
623 629Right-handed alpha
Helix 17
17
A
639 649Right-handed alpha
Helix 18
18
A
652 666Right-handed alpha
Helix 19
19
A
667 669Right-handed 310
Helix 20
20
A
675 688Right-handed alpha
Helix 21
21
A
689 705Right-handed alpha
Helix 22
22
A
706 723Right-handed alpha
Helix 23
23
A
724 745Right-handed alpha
Helix 24
24
A
745 750Right-handed alpha
Helix 25
25
A
760 772Right-handed alpha
Helix 26
26
A
838 858Right-handed alpha
Helix 27
27
A
888 896Right-handed alpha
Helix 28
28
A
905 913Right-handed alpha
Helix 29
29
A
919 942Right-handed alpha
Helix 30
30
A
948 950Right-handed 310
Helix 31
31
A
988 994Right-handed alpha
Helix 32
32
A
1005 1022Right-handed alpha
Helix 33
33
A
1023 1039Right-handed alpha
Helix 34
34
A
1045 1050Right-handed alpha
Helix 35
35
A
1050 1056Right-handed alpha
Helix 36
36
A
1060 1076Right-handed alpha
Helix 37
37
A
1082 1088Right-handed alpha
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There are 6 sheets in PDB entry 4AOF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
220 225anti-parallel
Strand 3
A
304 308parallel
Strand 4
A
271 272anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 412first strand
Strand 2
A
364 367anti-parallel
Strand 3
A
517 520anti-parallel
Strand 4
A
478 480anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 398first strand
Strand 2
A
384 388anti-parallel
Strand 3
A
428 433anti-parallel
Strand 4
A
462 467anti-parallel
Strand 5
A
485 486anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
783 785first strand
Strand 2
A
788 796anti-parallel
Strand 3
A
815 817anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
812 813first strand
Strand 2
A
830 831anti-parallel
Strand 3
A
878 880anti-parallel
Strand 4
A
869 870anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
885 887first strand
Strand 2
A
952 955anti-parallel
Strand 3
A
960 962anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il