Analysis of interatomic Contacts of Structural Units in PDB entry:
4AOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AOV entry

There is 1 chain in PDB entry 4AOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4AOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 30Right-handed alpha
Helix 2
2
A
44 51Right-handed alpha
Helix 3
3
A
53 67Right-handed alpha
Helix 4
4
A
78 86Right-handed alpha
Helix 5
5
A
93 103Right-handed alpha
Helix 6
6
A
182 201Right-handed alpha
Helix 7
7
A
216 232Right-handed alpha
Helix 8
8
A
232 239Right-handed alpha
Helix 9
9
A
248 258Right-handed alpha
Helix 10
10
A
267 283Right-handed alpha
Helix 11
11
A
308 317Right-handed alpha
Helix 12
12
A
325 344Right-handed alpha
Helix 13
13
A
345 366Right-handed alpha
Helix 14
14
A
369 374Right-handed alpha
Helix 15
15
A
385 401Right-handed alpha
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There are 4 sheets in PDB entry 4AOV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
9 13parallel
Strand 3
A
68 71parallel
Strand 4
A
299 303parallel
Strand 5
A
288 293anti-parallel
Strand 6
A
105 110anti-parallel
Strand 7
A
128 132anti-parallel
Strand 8
A
262 266parallel
Strand 9
A
203 208parallel
Strand 10
A
243 247parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 145first strand
Strand 2
A
174 180anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 156first strand
Strand 2
A
162 170anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 368first strand
Strand 2
A
382 383parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il