Analysis of interatomic Contacts of Structural Units in PDB entry:
4APO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4APO entry

There are 4 chains in PDB entry 4APO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 172ILE 313
B
 ALA 172ARG 325
D
 ALA 1GLU 6
E
 ALA 1GLU 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4APO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
172 176Right-handed 310
Helix 2
2
A
177 193Right-handed alpha
Helix 3
3
A
194 214Right-handed alpha
Helix 4
4
A
220 244Right-handed alpha
Helix 5
5
A
247 261Right-handed alpha
Helix 6
6
A
264 278Right-handed alpha
Helix 7
7
A
280 295Right-handed alpha
Helix 8
8
A
298 312Right-handed alpha
Helix 9
9
B
174 177Right-handed 310
Helix 10
10
B
178 193Right-handed alpha
Helix 11
11
B
194 215Right-handed alpha
Helix 12
12
B
220 244Right-handed alpha
Helix 13
13
B
247 261Right-handed alpha
Helix 14
14
B
264 278Right-handed alpha
Helix 15
15
B
280 295Right-handed alpha
Helix 16
16
B
298 325Right-handed alpha
Back to top of page
There are no sheets in PDB entry 4APO
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il