Analysis of interatomic Contacts of Structural Units in PDB entry:
4AQ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4AQ8 entry

There are 4 chains in PDB entry 4AQ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 208
B	MET 1	GLU 208
C	GLN 1	HIS 237
D	TYR 2	HIS 237

There are 16 helices in PDB entry 4AQ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	16	Right-handed 310
Helix 2	2	A	49	55	Right-handed alpha
Helix 3	3	A	139	144	Right-handed 310
Helix 4	4	B	11	16	Right-handed 310
Helix 5	5	B	49	55	Right-handed alpha
Helix 6	6	B	139	144	Right-handed 310
Helix 7	7	C	2	9	Right-handed 310
Helix 8	8	C	59	62	Right-handed 310
Helix 9	9	C	160	164	Right-handed 310
Helix 10	10	C	178	182	Right-handed alpha
Helix 11	11	C	219	223	Right-handed 310
Helix 12	12	D	5	9	Right-handed 310
Helix 13	13	D	59	62	Right-handed 310
Helix 14	14	D	160	164	Right-handed 310
Helix 15	15	D	178	182	Right-handed alpha
Helix 16	16	D	219	223	Right-handed 310

There are 22 sheets in PDB entry 4AQ8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, A, DB, C, DD, DE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	35	36	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	A	91	101	parallel
Strand 3	A	78	86	anti-parallel
Strand 4	A	44	48	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	64	67	anti-parallel
Strand 3	A	56	58	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	134	135	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	120	first strand
Strand 2	A	195	205	parallel
Strand 3	A	178	186	anti-parallel
Strand 4	A	146	149	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	164	167	anti-parallel
Strand 3	A	156	158	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	35	36	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	21	first strand
Strand 2	B	91	101	parallel
Strand 3	B	78	86	anti-parallel
Strand 4	B	44	48	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	64	67	anti-parallel
Strand 3	B	56	58	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	133	135	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	120	first strand
Strand 2	B	195	205	parallel
Strand 3	B	178	186	anti-parallel
Strand 4	B	146	149	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	164	167	anti-parallel
Strand 3	B	156	158	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	26	first strand
Strand 2	C	107	117	parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	52	57	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	72	75	anti-parallel
Strand 3	C	64	67	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	155	156	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	136	first strand
Strand 2	C	225	235	parallel
Strand 3	C	206	215	anti-parallel
Strand 4	C	166	171	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	146	first strand
Strand 2	C	193	195	anti-parallel
Strand 3	C	183	184	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	26	first strand
Strand 2	D	107	117	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	52	57	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	72	75	anti-parallel
Strand 3	D	64	67	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	155	156	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	136	first strand
Strand 2	D	225	235	parallel
Strand 3	D	206	215	anti-parallel
Strand 4	D	166	171	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	193	195	anti-parallel
Strand 3	D	183	184	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4AQ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4AQ8