Analysis of interatomic Contacts of Structural Units in PDB entry:
4ARJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ARJ entry

There are 2 chains in PDB entry 4ARJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 13HIS 334
B
 GLY 11HIS 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4ARJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 39Right-handed 310
Helix 2
2
A
116 124Right-handed alpha
Helix 3
3
A
126 135Right-handed alpha
Helix 4
4
A
152 179Right-handed alpha
Helix 5
5
A
205 218Right-handed alpha
Helix 6
6
A
226 248Right-handed alpha
Helix 7
7
A
251 258Right-handed alpha
Helix 8
8
A
259 274Right-handed alpha
Helix 9
9
A
274 280Right-handed alpha
Helix 10
10
A
281 290Right-handed alpha
Helix 11
11
A
292 301Right-handed alpha
Helix 12
12
A
303 309Right-handed alpha
Helix 13
13
A
309 323Right-handed alpha
Helix 14
14
A
328 332Right-handed 310
Helix 15
15
B
35 39Right-handed 310
Helix 16
16
B
116 126Right-handed alpha
Helix 17
17
B
129 136Right-handed alpha
Helix 18
18
B
152 178Right-handed alpha
Helix 19
19
B
205 218Right-handed alpha
Helix 20
20
B
226 248Right-handed alpha
Helix 21
21
B
251 258Right-handed alpha
Helix 22
22
B
259 280Right-handed alpha
Helix 23
23
B
281 290Right-handed alpha
Helix 24
24
B
292 301Right-handed alpha
Helix 25
25
B
303 309Right-handed alpha
Helix 26
26
B
309 323Right-handed alpha
Helix 27
27
B
328 332Right-handed 310
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There are 12 sheets in PDB entry 4ARJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
105 115parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
73 74anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
105 115anti-parallel
Strand 5
A
94 102anti-parallel
Strand 6
A
137 141anti-parallel
Strand 7
A
147 149anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
105 115anti-parallel
Strand 5
A
23 24parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
59 65anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
192 195anti-parallel
Strand 3
A
199 201anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
105 115parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
52 56anti-parallel
Strand 3
B
59 65anti-parallel
Strand 4
B
73 74anti-parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
52 56anti-parallel
Strand 3
B
59 65anti-parallel
Strand 4
B
105 115anti-parallel
Strand 5
B
94 102anti-parallel
Strand 6
B
137 141anti-parallel
Strand 7
B
147 150anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
52 56anti-parallel
Strand 3
B
59 65anti-parallel
Strand 4
B
105 115anti-parallel
Strand 5
B
23 24parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
59 65anti-parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 186first strand
Strand 2
B
192 195anti-parallel
Strand 3
B
198 201anti-parallel
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