Analysis of interatomic Contacts of Structural Units in PDB entry:
4ARP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ARP entry

There are 2 chains in PDB entry 4ARP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 13LYS 357
B
 VAL 13LYS 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4ARP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
116 124Right-handed alpha
Helix 2
2
A
129 136Right-handed alpha
Helix 3
3
A
152 165Right-handed alpha
Helix 4
4
A
168 173Right-handed alpha
Helix 5
5
A
194 198Right-handed 310
Helix 6
6
A
212 219Right-handed alpha
Helix 7
7
A
222 229Right-handed alpha
Helix 8
8
A
237 247Right-handed alpha
Helix 9
9
A
252 278Right-handed alpha
Helix 10
10
A
283 287Right-handed 310
Helix 11
11
A
288 303Right-handed alpha
Helix 12
12
A
305 310Right-handed alpha
Helix 13
13
A
310 320Right-handed alpha
Helix 14
14
A
321 332Right-handed alpha
Helix 15
15
A
336 353Right-handed alpha
Helix 16
16
B
116 125Right-handed alpha
Helix 17
17
B
126 128Right-handed 310
Helix 18
18
B
129 136Right-handed alpha
Helix 19
19
B
152 164Right-handed alpha
Helix 20
20
B
168 173Right-handed alpha
Helix 21
21
B
194 198Right-handed 310
Helix 22
22
B
212 219Right-handed alpha
Helix 23
23
B
222 229Right-handed alpha
Helix 24
24
B
236 247Right-handed alpha
Helix 25
25
B
252 278Right-handed alpha
Helix 26
26
B
283 287Right-handed 310
Helix 27
27
B
288 303Right-handed alpha
Helix 28
28
B
305 310Right-handed alpha
Helix 29
29
B
310 320Right-handed alpha
Helix 30
30
B
321 331Right-handed alpha
Helix 31
31
B
336 353Right-handed alpha
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There are 8 sheets in PDB entry 4ARP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
105 115anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
105 115anti-parallel
Strand 5
A
94 102anti-parallel
Strand 6
A
137 141anti-parallel
Strand 7
A
147 150anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
105 115anti-parallel
Strand 5
A
23 24anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 185first strand
Strand 2
A
201 203anti-parallel
Strand 3
A
206 207anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
105 115anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
52 56anti-parallel
Strand 3
B
59 65anti-parallel
Strand 4
B
105 115anti-parallel
Strand 5
B
94 102anti-parallel
Strand 6
B
137 141anti-parallel
Strand 7
B
147 150anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
52 56anti-parallel
Strand 3
B
59 65anti-parallel
Strand 4
B
105 115anti-parallel
Strand 5
B
23 24anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 185first strand
Strand 2
B
201 203anti-parallel
Strand 3
B
206 207anti-parallel
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