Analysis of interatomic Contacts of Structural Units in PDB entry:
4ARV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ARV entry

There are 2 chains in PDB entry 4ARV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6ILE 414
B
 GLY 6ILE 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4ARV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 33Right-handed alpha
Helix 2
2
A
49 70Right-handed alpha
Helix 3
3
A
90 105Right-handed alpha
Helix 4
4
A
136 149Right-handed alpha
Helix 5
5
A
151 153Right-handed 310
Helix 6
6
A
154 159Right-handed alpha
Helix 7
7
A
159 171Right-handed alpha
Helix 8
8
A
172 174Right-handed 310
Helix 9
9
A
175 184Right-handed alpha
Helix 10
10
A
189 193Right-handed 310
Helix 11
11
A
211 229Right-handed alpha
Helix 12
12
A
234 238Right-handed 310
Helix 13
13
A
241 261Right-handed alpha
Helix 14
14
A
262 283Right-handed alpha
Helix 15
15
A
306 318Right-handed alpha
Helix 16
16
A
359 365Right-handed alpha
Helix 17
17
A
397 408Right-handed alpha
Helix 18
18
A
409 413Right-handed 310
Helix 19
19
B
27 33Right-handed alpha
Helix 20
20
B
49 70Right-handed alpha
Helix 21
21
B
90 105Right-handed alpha
Helix 22
22
B
136 149Right-handed alpha
Helix 23
23
B
151 153Right-handed 310
Helix 24
24
B
154 159Right-handed alpha
Helix 25
25
B
159 171Right-handed alpha
Helix 26
26
B
172 174Right-handed 310
Helix 27
27
B
175 184Right-handed alpha
Helix 28
28
B
189 193Right-handed 310
Helix 29
29
B
211 229Right-handed alpha
Helix 30
30
B
234 238Right-handed 310
Helix 31
31
B
241 261Right-handed alpha
Helix 32
32
B
262 282Right-handed alpha
Helix 33
33
B
306 318Right-handed alpha
Helix 34
34
B
359 366Right-handed alpha
Helix 35
35
B
397 408Right-handed alpha
Helix 36
36
B
409 413Right-handed 310
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There are 8 sheets in PDB entry 4ARV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
83 87parallel
Strand 3
A
300 305parallel
Strand 4
A
8 17parallel
Strand 5
A
335 342anti-parallel
Strand 6
A
349 357anti-parallel
Strand 7
A
377 380anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
83 87parallel
Strand 3
A
300 305parallel
Strand 4
A
8 17parallel
Strand 5
A
335 342anti-parallel
Strand 6
A
349 357anti-parallel
Strand 7
A
395 396anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
349 357anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 200first strand
Strand 2
A
207 210anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 87first strand
Strand 2
B
300 305parallel
Strand 3
B
8 17parallel
Strand 4
B
335 342anti-parallel
Strand 5
B
349 357anti-parallel
Strand 6
B
377 380anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 87first strand
Strand 2
B
300 305parallel
Strand 3
B
8 17parallel
Strand 4
B
335 342anti-parallel
Strand 5
B
349 357anti-parallel
Strand 6
B
395 396anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 380first strand
Strand 2
B
349 357anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 200first strand
Strand 2
B
207 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il