Analysis of interatomic Contacts of Structural Units in PDB entry:
4AU8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AU8 entry

There are 2 chains in PDB entry 4AU8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0PHE 289
B
 GLN 2PHE 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4AU8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 2Right-handed 310
Helix 2
2
A
45 56Right-handed alpha
Helix 3
3
A
87 95Right-handed alpha
Helix 4
4
A
99 120Right-handed alpha
Helix 5
5
A
128 130Right-handed 310
Helix 6
6
A
164 168Right-handed 310
Helix 7
7
A
169 174Right-handed alpha
Helix 8
8
A
181 197Right-handed alpha
Helix 9
9
A
207 220Right-handed alpha
Helix 10
10
A
227 233Right-handed 310
Helix 11
11
A
247 251Right-handed 310
Helix 12
12
A
256 267Right-handed alpha
Helix 13
13
A
270 274Right-handed 310
Helix 14
14
A
276 282Right-handed alpha
Helix 15
15
A
283 287Right-handed 310
Helix 16
16
B
42 56Right-handed alpha
Helix 17
17
B
87 93Right-handed alpha
Helix 18
18
B
99 120Right-handed alpha
Helix 19
19
B
128 130Right-handed 310
Helix 20
20
B
164 168Right-handed 310
Helix 21
21
B
169 174Right-handed alpha
Helix 22
22
B
181 197Right-handed alpha
Helix 23
23
B
207 220Right-handed alpha
Helix 24
24
B
227 233Right-handed 310
Helix 25
25
B
247 251Right-handed 310
Helix 26
26
B
256 267Right-handed alpha
Helix 27
27
B
270 274Right-handed 310
Helix 28
28
B
276 282Right-handed alpha
Helix 29
29
B
283 287Right-handed 310
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There are 6 sheets in PDB entry 4AU8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 12first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
29 35anti-parallel
Strand 4
A
76 81anti-parallel
Strand 5
A
66 70anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
132 134anti-parallel
Strand 3
A
140 142anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
149 150anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 12first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
29 36anti-parallel
Strand 4
B
75 80anti-parallel
Strand 5
B
66 71anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
132 134anti-parallel
Strand 3
B
140 142anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
149 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il