Analysis of interatomic Contacts of Structural Units in PDB entry:
4AUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AUB entry

There are 8 chains in PDB entry 4AUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2ASN 338
B
 TRP 3LYS 346
C
 VAL 2LYS 346
D
 TRP 3LEU 337
E
 VAL 2LYS 346
F
 TRP 3ILE 332
G
 VAL 2LYS 346
H
 TRP 3LYS 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are118 helices in PDB entry 4AUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 55Right-handed alpha
Helix 2
2
A
71 85Right-handed alpha
Helix 3
3
A
88 92Right-handed 310
Helix 4
4
A
112 128Right-handed alpha
Helix 5
5
A
145 159Right-handed alpha
Helix 6
6
A
171 184Right-handed alpha
Helix 7
7
A
201 206Right-handed alpha
Helix 8
8
A
207 215Right-handed alpha
Helix 9
9
A
228 232Right-handed 310
Helix 10
10
A
260 277Right-handed alpha
Helix 11
11
A
280 290Right-handed alpha
Helix 12
12
A
304 313Right-handed alpha
Helix 13
13
A
314 317Right-handed 310
Helix 14
14
A
321 336Right-handed alpha
Helix 15
15
B
41 55Right-handed alpha
Helix 16
16
B
71 85Right-handed alpha
Helix 17
17
B
86 92Right-handed 310
Helix 18
18
B
112 128Right-handed alpha
Helix 19
19
B
145 159Right-handed alpha
Helix 20
20
B
171 184Right-handed alpha
Helix 21
21
B
201 206Right-handed alpha
Helix 22
22
B
207 215Right-handed alpha
Helix 23
23
B
225 232Right-handed 310
Helix 24
24
B
260 278Right-handed alpha
Helix 25
25
B
280 290Right-handed alpha
Helix 26
26
B
304 313Right-handed alpha
Helix 27
27
B
314 317Right-handed 310
Helix 28
28
B
321 332Right-handed alpha
Helix 29
29
B
340 345Right-handed alpha
Helix 30
30
C
41 55Right-handed alpha
Helix 31
31
C
71 85Right-handed alpha
Helix 32
32
C
88 92Right-handed 310
Helix 33
33
C
112 128Right-handed alpha
Helix 34
34
C
145 159Right-handed alpha
Helix 35
35
C
171 184Right-handed alpha
Helix 36
36
C
201 206Right-handed alpha
Helix 37
37
C
207 215Right-handed alpha
Helix 38
38
C
225 232Right-handed 310
Helix 39
39
C
260 278Right-handed alpha
Helix 40
40
C
280 290Right-handed alpha
Helix 41
41
C
304 313Right-handed alpha
Helix 42
42
C
314 317Right-handed 310
Helix 43
43
C
321 329Right-handed alpha
Helix 44
44
C
340 345Right-handed alpha
Helix 45
45
D
41 55Right-handed alpha
Helix 46
46
D
71 85Right-handed alpha
Helix 47
47
D
88 92Right-handed 310
Helix 48
48
D
112 128Right-handed alpha
Helix 49
49
D
145 159Right-handed alpha
Helix 50
50
D
171 184Right-handed alpha
Helix 51
51
D
201 206Right-handed alpha
Helix 52
52
D
207 215Right-handed alpha
Helix 53
53
D
260 277Right-handed alpha
Helix 54
54
D
280 291Right-handed alpha
Helix 55
55
D
304 313Right-handed alpha
Helix 56
56
D
314 317Right-handed 310
Helix 57
57
D
321 336Right-handed alpha
Helix 58
58
E
41 55Right-handed alpha
Helix 59
59
E
71 85Right-handed alpha
Helix 60
60
E
88 92Right-handed 310
Helix 61
61
E
112 128Right-handed alpha
Helix 62
62
E
145 159Right-handed alpha
Helix 63
63
E
171 184Right-handed alpha
Helix 64
64
E
201 206Right-handed alpha
Helix 65
65
E
207 216Right-handed alpha
Helix 66
66
E
225 232Right-handed 310
Helix 67
67
E
269 277Right-handed alpha
Helix 68
68
E
280 291Right-handed alpha
Helix 69
69
E
304 313Right-handed alpha
Helix 70
70
E
314 317Right-handed 310
Helix 71
71
E
340 345Right-handed alpha
Helix 72
72
F
8 13Right-handed alpha
Helix 73
73
F
41 55Right-handed alpha
Helix 74
74
F
71 85Right-handed alpha
Helix 75
75
F
88 92Right-handed 310
Helix 76
76
F
112 128Right-handed alpha
Helix 77
77
F
145 159Right-handed alpha
Helix 78
78
F
171 184Right-handed alpha
Helix 79
79
F
201 206Right-handed alpha
Helix 80
80
F
207 215Right-handed alpha
Helix 81
81
F
225 229Right-handed 310
Helix 82
82
F
264 278Right-handed alpha
Helix 83
83
F
280 290Right-handed alpha
Helix 84
84
F
304 313Right-handed alpha
Helix 85
85
F
314 317Right-handed 310
Helix 86
86
F
321 332Right-handed alpha
Helix 87
87
G
8 13Right-handed alpha
Helix 88
88
G
41 55Right-handed alpha
Helix 89
89
G
71 85Right-handed alpha
Helix 90
90
G
88 92Right-handed 310
Helix 91
91
G
112 128Right-handed alpha
Helix 92
92
G
145 159Right-handed alpha
Helix 93
93
G
171 184Right-handed alpha
Helix 94
94
G
201 206Right-handed alpha
Helix 95
95
G
207 215Right-handed alpha
Helix 96
96
G
225 232Right-handed 310
Helix 97
97
G
242 246Right-handed 310
Helix 98
98
G
255 259Right-handed 310
Helix 99
99
G
266 278Right-handed alpha
Helix 100
100
G
280 290Right-handed alpha
Helix 101
101
G
304 313Right-handed alpha
Helix 102
102
G
314 317Right-handed 310
Helix 103
103
G
321 332Right-handed alpha
Helix 104
104
G
340 345Right-handed alpha
Helix 105
105
H
41 55Right-handed alpha
Helix 106
106
H
71 85Right-handed alpha
Helix 107
107
H
88 92Right-handed 310
Helix 108
108
H
112 128Right-handed alpha
Helix 109
109
H
145 159Right-handed alpha
Helix 110
110
H
171 184Right-handed alpha
Helix 111
111
H
201 206Right-handed alpha
Helix 112
112
H
207 215Right-handed alpha
Helix 113
113
H
225 229Right-handed 310
Helix 114
114
H
270 278Right-handed alpha
Helix 115
115
H
280 291Right-handed alpha
Helix 116
116
H
304 313Right-handed alpha
Helix 117
117
H
314 317Right-handed 310
Helix 118
118
H
340 345Right-handed alpha
Back to top of page

There are 16 sheets in PDB entry 4AUB. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB, GA, GB, HA, HB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
24 26anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
297 300parallel
Strand 3
A
218 221parallel
Strand 4
A
191 193parallel
Strand 5
A
162 168parallel
Strand 6
A
132 137parallel
Strand 7
A
93 98parallel
Strand 8
A
59 61parallel
Strand 9
A
28 31parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
24 26anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
297 300parallel
Strand 3
B
218 222parallel
Strand 4
B
191 193parallel
Strand 5
B
162 168parallel
Strand 6
B
132 137parallel
Strand 7
B
93 98parallel
Strand 8
B
59 61parallel
Strand 9
B
28 31parallel
Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 17first strand
Strand 2
C
24 26anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 31first strand
Strand 2
C
297 300parallel
Strand 3
C
218 221parallel
Strand 4
C
191 193parallel
Strand 5
C
162 168parallel
Strand 6
C
132 137parallel
Strand 7
C
93 98parallel
Strand 8
C
59 61parallel
Strand 9
C
28 31parallel
Back to list of sheets
Back to top of page

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 17first strand
Strand 2
D
24 26anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 31first strand
Strand 2
D
297 300parallel
Strand 3
D
218 222parallel
Strand 4
D
191 193parallel
Strand 5
D
162 168parallel
Strand 6
D
132 137parallel
Strand 7
D
93 98parallel
Strand 8
D
59 61parallel
Strand 9
D
28 31parallel
Back to list of sheets
Back to top of page

There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 17first strand
Strand 2
E
24 26anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
28 31first strand
Strand 2
E
297 300parallel
Strand 3
E
218 222parallel
Strand 4
E
191 193parallel
Strand 5
E
162 168parallel
Strand 6
E
132 137parallel
Strand 7
E
93 98parallel
Strand 8
E
59 61parallel
Strand 9
E
28 31parallel
Back to list of sheets
Back to top of page

There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
15 17first strand
Strand 2
F
24 26anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
28 31first strand
Strand 2
F
297 300parallel
Strand 3
F
218 222parallel
Strand 4
F
191 193parallel
Strand 5
F
162 168parallel
Strand 6
F
132 137parallel
Strand 7
F
93 98parallel
Strand 8
F
59 61parallel
Strand 9
F
28 31parallel
Back to list of sheets
Back to top of page

There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
15 17first strand
Strand 2
G
24 26anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
28 31first strand
Strand 2
G
297 300parallel
Strand 3
G
218 222parallel
Strand 4
G
191 193parallel
Strand 5
G
162 168parallel
Strand 6
G
132 137parallel
Strand 7
G
93 98parallel
Strand 8
G
59 61parallel
Strand 9
G
28 31parallel
Back to list of sheets
Back to top of page

There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
15 17first strand
Strand 2
H
24 26anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
28 31first strand
Strand 2
H
297 300parallel
Strand 3
H
218 222parallel
Strand 4
H
191 193parallel
Strand 5
H
162 168parallel
Strand 6
H
132 137parallel
Strand 7
H
93 98parallel
Strand 8
H
59 61parallel
Strand 9
H
28 31parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il