Analysis of interatomic Contacts of Structural Units in PDB entry:
4AUE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AUE entry

There are 4 chains in PDB entry 4AUE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 27ASP 697
B
 GLU 27SER 698
C
 GLU 27ASP 697
D
 GLU 27SER 698
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are110 helices in PDB entry 4AUE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 73Right-handed alpha
Helix 2
2
A
98 101Right-handed 310
Helix 3
3
A
104 107Right-handed 310
Helix 4
4
A
164 166Right-handed 310
Helix 5
5
A
167 176Right-handed alpha
Helix 6
6
A
190 200Right-handed alpha
Helix 7
7
A
203 212Right-handed alpha
Helix 8
8
A
213 216Right-handed 310
Helix 9
9
A
219 223Right-handed 310
Helix 10
10
A
257 268Right-handed alpha
Helix 11
11
A
270 282Right-handed alpha
Helix 12
12
A
298 302Right-handed 310
Helix 13
13
A
335 340Right-handed alpha
Helix 14
14
A
359 378Right-handed alpha
Helix 15
15
A
381 385Right-handed 310
Helix 16
16
A
385 389Right-handed 310
Helix 17
17
A
452 456Right-handed 310
Helix 18
18
A
459 468Right-handed alpha
Helix 19
19
A
470 487Right-handed alpha
Helix 20
20
A
490 505Right-handed alpha
Helix 21
21
A
505 516Right-handed alpha
Helix 22
22
A
560 577Right-handed alpha
Helix 23
23
A
600 604Right-handed 310
Helix 24
24
A
613 618Right-handed alpha
Helix 25
25
A
629 641Right-handed alpha
Helix 26
26
A
651 660Right-handed alpha
Helix 27
27
A
673 688Right-handed alpha
Helix 28
28
A
690 694Right-handed 310
Helix 29
29
B
61 73Right-handed alpha
Helix 30
30
B
98 101Right-handed 310
Helix 31
31
B
104 107Right-handed 310
Helix 32
32
B
164 166Right-handed 310
Helix 33
33
B
167 176Right-handed alpha
Helix 34
34
B
190 200Right-handed alpha
Helix 35
35
B
203 212Right-handed alpha
Helix 36
36
B
213 216Right-handed 310
Helix 37
37
B
257 268Right-handed alpha
Helix 38
38
B
270 282Right-handed alpha
Helix 39
39
B
298 302Right-handed 310
Helix 40
40
B
335 340Right-handed alpha
Helix 41
41
B
359 378Right-handed alpha
Helix 42
42
B
381 385Right-handed 310
Helix 43
43
B
385 389Right-handed 310
Helix 44
44
B
452 456Right-handed 310
Helix 45
45
B
459 468Right-handed alpha
Helix 46
46
B
470 487Right-handed alpha
Helix 47
47
B
490 505Right-handed alpha
Helix 48
48
B
505 516Right-handed alpha
Helix 49
49
B
560 576Right-handed alpha
Helix 50
50
B
597 599Right-handed 310
Helix 51
51
B
600 604Right-handed 310
Helix 52
52
B
613 618Right-handed alpha
Helix 53
53
B
629 641Right-handed alpha
Helix 54
54
B
651 660Right-handed alpha
Helix 55
55
B
673 688Right-handed alpha
Helix 56
56
B
690 694Right-handed 310
Helix 57
57
C
61 73Right-handed alpha
Helix 58
58
C
104 107Right-handed 310
Helix 59
59
C
164 166Right-handed 310
Helix 60
60
C
167 176Right-handed alpha
Helix 61
61
C
190 200Right-handed alpha
Helix 62
62
C
203 212Right-handed alpha
Helix 63
63
C
213 216Right-handed 310
Helix 64
64
C
257 268Right-handed alpha
Helix 65
65
C
270 282Right-handed alpha
Helix 66
66
C
298 302Right-handed 310
Helix 67
67
C
335 340Right-handed alpha
Helix 68
68
C
359 378Right-handed alpha
Helix 69
69
C
381 385Right-handed 310
Helix 70
70
C
385 389Right-handed 310
Helix 71
71
C
452 456Right-handed 310
Helix 72
72
C
459 468Right-handed alpha
Helix 73
73
C
470 487Right-handed alpha
Helix 74
74
C
490 505Right-handed alpha
Helix 75
75
C
505 516Right-handed alpha
Helix 76
76
C
560 577Right-handed alpha
Helix 77
77
C
597 599Right-handed 310
Helix 78
78
C
600 604Right-handed 310
Helix 79
79
C
613 618Right-handed alpha
Helix 80
80
C
629 641Right-handed alpha
Helix 81
81
C
651 660Right-handed alpha
Helix 82
82
C
673 688Right-handed alpha
Helix 83
83
C
690 694Right-handed 310
Helix 84
84
D
61 73Right-handed alpha
Helix 85
85
D
104 107Right-handed 310
Helix 86
86
D
164 166Right-handed 310
Helix 87
87
D
167 176Right-handed alpha
Helix 88
88
D
190 200Right-handed alpha
Helix 89
89
D
203 212Right-handed alpha
Helix 90
90
D
213 216Right-handed 310
Helix 91
91
D
257 268Right-handed alpha
Helix 92
92
D
270 282Right-handed alpha
Helix 93
93
D
298 302Right-handed 310
Helix 94
94
D
335 340Right-handed alpha
Helix 95
95
D
359 378Right-handed alpha
Helix 96
96
D
381 385Right-handed 310
Helix 97
97
D
385 389Right-handed 310
Helix 98
98
D
452 456Right-handed 310
Helix 99
99
D
459 468Right-handed alpha
Helix 100
100
D
470 486Right-handed alpha
Helix 101
101
D
490 505Right-handed alpha
Helix 102
102
D
505 516Right-handed alpha
Helix 103
103
D
560 577Right-handed alpha
Helix 104
104
D
597 599Right-handed 310
Helix 105
105
D
600 604Right-handed 310
Helix 106
106
D
613 618Right-handed alpha
Helix 107
107
D
629 641Right-handed alpha
Helix 108
108
D
651 660Right-handed alpha
Helix 109
109
D
673 688Right-handed alpha
Helix 110
110
D
690 694Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 4AUE. Click on sheet of interest to get list of strands forming it: AA, AB, CA, AC, BA, BB, CB, CC, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
C
442 448anti-parallel
Strand 3
D
442 448anti-parallel
Strand 4
B
50 51anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 94first strand
Strand 2
A
113 121anti-parallel
Strand 3
A
138 145anti-parallel
Strand 4
A
148 155anti-parallel
Strand 5
A
225 226anti-parallel
Strand 6
A
240 249anti-parallel
Strand 7
A
287 296anti-parallel
Strand 8
A
322 331anti-parallel
Strand 9
A
85 94anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
A
442 448anti-parallel
Strand 3
B
442 448anti-parallel
Strand 4
D
50 51anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 595first strand
Strand 2
A
580 585parallel
Strand 3
A
551 555parallel
Strand 4
A
606 610parallel
Strand 5
A
645 648parallel
Strand 6
A
668 671parallel
Back to list of sheets
Back to top of page

There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 94first strand
Strand 2
B
113 121anti-parallel
Strand 3
B
138 145anti-parallel
Strand 4
B
148 155anti-parallel
Strand 5
B
225 226anti-parallel
Strand 6
B
240 249anti-parallel
Strand 7
B
287 296anti-parallel
Strand 8
B
322 331anti-parallel
Strand 9
B
85 94anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
594 595first strand
Strand 2
B
580 585parallel
Strand 3
B
551 555parallel
Strand 4
B
606 610parallel
Strand 5
B
645 648parallel
Strand 6
B
668 671parallel
Back to list of sheets
Back to top of page

There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 94first strand
Strand 2
C
113 121anti-parallel
Strand 3
C
138 145anti-parallel
Strand 4
C
148 155anti-parallel
Strand 5
C
225 226anti-parallel
Strand 6
C
240 249anti-parallel
Strand 7
C
287 296anti-parallel
Strand 8
C
322 331anti-parallel
Strand 9
C
85 94anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
594 595first strand
Strand 2
C
580 585parallel
Strand 3
C
551 555parallel
Strand 4
C
606 610parallel
Strand 5
C
645 648parallel
Strand 6
C
668 671parallel
Back to list of sheets
Back to top of page

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 94first strand
Strand 2
D
113 121anti-parallel
Strand 3
D
138 145anti-parallel
Strand 4
D
148 155anti-parallel
Strand 5
D
225 226anti-parallel
Strand 6
D
240 249anti-parallel
Strand 7
D
287 296anti-parallel
Strand 8
D
322 331anti-parallel
Strand 9
D
85 94anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
594 595first strand
Strand 2
D
580 585parallel
Strand 3
D
551 555parallel
Strand 4
D
606 610parallel
Strand 5
D
645 648parallel
Strand 6
D
668 671parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il