Analysis of interatomic Contacts of Structural Units in PDB entry:
4AUL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AUL entry

There are 2 chains in PDB entry 4AUL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 21SER 698
B
 PRO 22VAL 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are120 helices in PDB entry 4AUL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 25Right-handed 310
Helix 2
2
A
61 73Right-handed alpha
Helix 3
3
A
104 107Right-handed 310
Helix 4
4
A
164 166Right-handed 310
Helix 5
5
A
167 176Right-handed alpha
Helix 6
6
A
190 200Right-handed alpha
Helix 7
7
A
203 212Right-handed alpha
Helix 8
8
A
213 216Right-handed 310
Helix 9
9
A
219 223Right-handed 310
Helix 10
10
A
257 268Right-handed alpha
Helix 11
11
A
270 282Right-handed alpha
Helix 12
12
A
296 300Right-handed 310
Helix 13
13
A
335 340Right-handed alpha
Helix 14
14
A
359 378Right-handed alpha
Helix 15
15
A
381 385Right-handed 310
Helix 16
16
A
385 389Right-handed 310
Helix 17
17
A
452 456Right-handed 310
Helix 18
18
A
459 468Right-handed alpha
Helix 19
19
A
470 486Right-handed alpha
Helix 20
20
A
490 505Right-handed alpha
Helix 21
21
A
505 516Right-handed alpha
Helix 22
22
A
524 528Right-handed 310
Helix 23
23
A
538 542Right-handed 310
Helix 24
24
A
560 576Right-handed alpha
Helix 25
25
A
600 604Right-handed 310
Helix 26
26
A
612 617Right-handed 310
Helix 27
27
A
629 641Right-handed alpha
Helix 28
28
A
652 659Right-handed alpha
Helix 29
29
A
673 688Right-handed alpha
Helix 30
30
A
690 694Right-handed 310
Helix 31
31
B
23 25Right-handed 310
Helix 32
32
B
61 73Right-handed alpha
Helix 33
33
B
104 107Right-handed 310
Helix 34
34
B
164 166Right-handed 310
Helix 35
35
B
167 176Right-handed alpha
Helix 36
36
B
190 200Right-handed alpha
Helix 37
37
B
203 212Right-handed alpha
Helix 38
38
B
213 216Right-handed 310
Helix 39
39
B
219 223Right-handed 310
Helix 40
40
B
257 268Right-handed alpha
Helix 41
41
B
270 282Right-handed alpha
Helix 42
42
B
296 300Right-handed 310
Helix 43
43
B
335 340Right-handed alpha
Helix 44
44
B
359 378Right-handed alpha
Helix 45
45
B
381 385Right-handed 310
Helix 46
46
B
385 389Right-handed 310
Helix 47
47
B
452 456Right-handed 310
Helix 48
48
B
459 468Right-handed alpha
Helix 49
49
B
470 487Right-handed alpha
Helix 50
50
B
490 505Right-handed alpha
Helix 51
51
B
505 516Right-handed alpha
Helix 52
52
B
524 528Right-handed 310
Helix 53
53
B
538 542Right-handed 310
Helix 54
54
B
560 577Right-handed alpha
Helix 55
55
B
600 604Right-handed 310
Helix 56
56
B
612 618Right-handed 310
Helix 57
57
B
629 641Right-handed alpha
Helix 58
58
B
652 660Right-handed alpha
Helix 59
59
B
673 688Right-handed alpha
Helix 60
60
B
690 694Right-handed 310
Helix 61
61
C
21 26Right-handed alpha
Helix 62
62
C
61 73Right-handed alpha
Helix 63
63
C
104 107Right-handed 310
Helix 64
64
C
164 166Right-handed 310
Helix 65
65
C
167 176Right-handed alpha
Helix 66
66
C
190 200Right-handed alpha
Helix 67
67
C
203 212Right-handed alpha
Helix 68
68
C
213 216Right-handed 310
Helix 69
69
C
219 223Right-handed 310
Helix 70
70
C
257 268Right-handed alpha
Helix 71
71
C
270 282Right-handed alpha
Helix 72
72
C
298 300Right-handed 310
Helix 73
73
C
335 340Right-handed alpha
Helix 74
74
C
359 378Right-handed alpha
Helix 75
75
C
381 385Right-handed 310
Helix 76
76
C
385 389Right-handed 310
Helix 77
77
C
452 456Right-handed 310
Helix 78
78
C
459 468Right-handed alpha
Helix 79
79
C
470 487Right-handed alpha
Helix 80
80
C
490 505Right-handed alpha
Helix 81
81
C
505 516Right-handed alpha
Helix 82
82
C
524 528Right-handed 310
Helix 83
83
C
538 542Right-handed 310
Helix 84
84
C
560 576Right-handed alpha
Helix 85
85
C
600 604Right-handed 310
Helix 86
86
C
612 618Right-handed 310
Helix 87
87
C
629 641Right-handed alpha
Helix 88
88
C
653 660Right-handed alpha
Helix 89
89
C
673 688Right-handed alpha
Helix 90
90
C
690 694Right-handed 310
Helix 91
91
D
21 26Right-handed alpha
Helix 92
92
D
61 73Right-handed alpha
Helix 93
93
D
104 107Right-handed 310
Helix 94
94
D
164 166Right-handed 310
Helix 95
95
D
167 176Right-handed alpha
Helix 96
96
D
190 200Right-handed alpha
Helix 97
97
D
203 212Right-handed alpha
Helix 98
98
D
213 216Right-handed 310
Helix 99
99
D
219 223Right-handed 310
Helix 100
100
D
257 268Right-handed alpha
Helix 101
101
D
270 282Right-handed alpha
Helix 102
102
D
298 300Right-handed 310
Helix 103
103
D
335 340Right-handed alpha
Helix 104
104
D
359 378Right-handed alpha
Helix 105
105
D
381 385Right-handed 310
Helix 106
106
D
385 389Right-handed 310
Helix 107
107
D
452 456Right-handed 310
Helix 108
108
D
459 468Right-handed alpha
Helix 109
109
D
470 487Right-handed alpha
Helix 110
110
D
490 505Right-handed alpha
Helix 111
111
D
505 516Right-handed alpha
Helix 112
112
D
524 528Right-handed 310
Helix 113
113
D
538 542Right-handed 310
Helix 114
114
D
560 577Right-handed alpha
Helix 115
115
D
600 604Right-handed 310
Helix 116
116
D
612 617Right-handed 310
Helix 117
117
D
629 641Right-handed alpha
Helix 118
118
D
653 659Right-handed alpha
Helix 119
119
D
673 688Right-handed alpha
Helix 120
120
D
690 694Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 4AUL. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, CA, AE, BA, BB, BC, BD, CB, CC, A, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
D
407 408parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
C
442 448anti-parallel
Strand 3
D
442 448anti-parallel
Strand 4
B
50 51anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 94first strand
Strand 2
A
113 121anti-parallel
Strand 3
A
138 145anti-parallel
Strand 4
A
148 155anti-parallel
Strand 5
A
225 226anti-parallel
Strand 6
A
240 249anti-parallel
Strand 7
A
287 295anti-parallel
Strand 8
A
321 331anti-parallel
Strand 9
A
85 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
D
27 28parallel
Back to list of sheets
Back to top of page

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
A
442 448anti-parallel
Strand 3
B
442 448anti-parallel
Strand 4
D
50 51anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 595first strand
Strand 2
A
580 585parallel
Strand 3
A
551 555parallel
Strand 4
A
606 610parallel
Strand 5
A
645 648parallel
Strand 6
A
668 671parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
C
407 408parallel
Back to list of sheets
Back to top of page

There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 94first strand
Strand 2
B
113 121anti-parallel
Strand 3
B
138 145anti-parallel
Strand 4
B
148 155anti-parallel
Strand 5
B
225 226anti-parallel
Strand 6
B
240 249anti-parallel
Strand 7
B
287 295anti-parallel
Strand 8
B
321 331anti-parallel
Strand 9
B
85 94anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 408first strand
Strand 2
C
27 28parallel
Back to list of sheets
Back to top of page

There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
594 595first strand
Strand 2
B
580 585parallel
Strand 3
B
551 555parallel
Strand 4
B
606 610parallel
Strand 5
B
645 648parallel
Strand 6
B
668 671parallel
Back to list of sheets
Back to top of page

There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 94first strand
Strand 2
C
113 121anti-parallel
Strand 3
C
138 145anti-parallel
Strand 4
C
148 155anti-parallel
Strand 5
C
225 226anti-parallel
Strand 6
C
240 249anti-parallel
Strand 7
C
287 296anti-parallel
Strand 8
C
321 331anti-parallel
Strand 9
C
85 94anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
594 595first strand
Strand 2
C
580 585parallel
Strand 3
C
551 555parallel
Strand 4
C
606 610parallel
Strand 5
C
645 648parallel
Strand 6
C
668 671parallel
Back to list of sheets
Back to top of page

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 94first strand
Strand 2
D
113 121anti-parallel
Strand 3
D
138 145anti-parallel
Strand 4
D
148 155anti-parallel
Strand 5
D
225 226anti-parallel
Strand 6
D
240 249anti-parallel
Strand 7
D
287 296anti-parallel
Strand 8
D
322 331anti-parallel
Strand 9
D
85 94anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
594 595first strand
Strand 2
D
580 585parallel
Strand 3
D
551 555parallel
Strand 4
D
606 610parallel
Strand 5
D
645 648parallel
Strand 6
D
668 671parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il